RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 NOBOXO60393 691 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 DFNA5O60443 496 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 CREG1O75629 220 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 PRSS23O95084 383 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 RPSAP08865 295 aaKnown RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 CHRM5P08912 532 aaPredicted RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 CHRNB1P11230 501 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 CTSEP14091 401 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 HOXB9P17482 250 aaPredicted RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 COL9A1P20849 921 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 ATP6V1B2P21281 511 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 CD27P26842 260 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 HOXA6P31267 233 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 TTKP33981 857 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 CHI3L1P36222 383 aaPredicted RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 ACTR1BP42025 376 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 RGS19P49795 217 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 SMIM11AP58511 58 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 MTPNP58546 118 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 ACTR1AP61163 376 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 RACK1P63244 317 aaKnown RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 CSNK1G2P78368 415 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 PRR5P85299 388 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 C2orf80Q0P641 193 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 BIKQ13323 160 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 PLCL1Q15111 1095 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 TCEA2Q15560 299 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 UGT8Q16880 541 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 ZXDCQ2QGD7 858 aaPredicted RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 HKDC1Q2TB90 917 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 ZC3H12BQ5HYM0 836 aaKnown RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 CATSPEREQ5SY80 951 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 GCNT6Q5T4J0 391 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 NAIF1Q69YI7 327 aaPredicted RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 OR4C11Q6IEV9 310 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 TMEM92Q6UXU6 159 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 CYP2R1Q6VVX0 501 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 GCNT7Q6ZNI0 430 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 Q6ZSR6 202 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 KRT73Q86Y46 540 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 SFTPA1Q8IWL2 248 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 SPEM1Q8N4L4 309 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 DTWD1Q8N5C7 304 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 OR2A1Q8NGT9 310 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 PSMA8Q8TAA3 256 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 C16orf78Q8WTQ4 265 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 HMGB4Q8WW32 186 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 NRG4Q8WWG1 115 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 FIG4Q92562 907 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 N4BP2L2Q92802 583 aaPredicted RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 PMM1Q92871 262 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 SLC47A1Q96FL8 570 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 KLHDC7BQ96G42 594 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 AURKBQ96GD4 344 aaPredicted RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 PYURFQ96I23 114 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 ZNF570Q96NI8 536 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 INSM2Q96T92 566 aaPredicted RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 CD180Q99467 661 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 PKP2Q99959 881 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 DPH2Q9BQC3 489 aaPredicted RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 CHID1Q9BWS9 393 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 ANKRD60Q9BZ19 345 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 TWSG1Q9GZX9 223 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 CHRNA10Q9GZZ6 450 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 FGF22Q9HCT0 170 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 VCX3AQ9NNX9 186 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 PNPLA3Q9NST1 481 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 SMPD3Q9NY59 655 aaPredicted RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 TUBA8Q9NY65 449 aaPredicted RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 WSB2Q9NYS7 404 aaPredicted RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 EPHA6Q9UF33 1036 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 EGFL7Q9UHF1 273 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 ZNF639Q9UID6 485 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 FBXL21Q9UKT6 434 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 FAF1Q9UNN5 650 aaPredicted RBP7.19□□□□□ -1.26
VPS39-204ENST00000561818 KCNK6Q9Y257 313 aa7.19□□□□□ -1.26
VPS39-204ENST00000561818 MYO9BQ13459 2157 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 SMIM31A0A1B0GVY4 71 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 A0A1W2PPV9 198 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 GSAPA4D1B5 854 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 A6NCN8 305 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 LILRA5A6NI73 299 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 DUXAA6NLW8 204 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 GABRR3A8MPY1 467 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 H3BQ06 376 aaPredicted RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 STK25O00506 426 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 PLPP1O14494 284 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 YKT6O15498 198 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 SUV39H1O43463 412 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 ASNA1O43681 348 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 PRICKLE3O43900 615 aaPredicted RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 PRAMEF4O60810 478 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 SERPINB7O75635 380 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 TGFB1P01137 390 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 ALBP02768 609 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 KLK1P06870 262 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 FAM58BPP0C7Q3 252 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 BMP1P13497 986 aa7.18□□□□□ -1.26
VPS39-204ENST00000561818 HOXB3P14651 431 aaPredicted RBP7.18□□□□□ -1.26
VPS39-204ENST00000561818 ENGP17813 658 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms