RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ABI3Q9P2A4 366 aa9.6□□□□□ -0.87
LDLR-214ENST00000560628 RNF14Q9UBS8 474 aa9.6□□□□□ -0.87
LDLR-214ENST00000560628 SH3BGRL2Q9UJC5 107 aa9.6□□□□□ -0.87
LDLR-214ENST00000560628 URADA6NGE7 173 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 GABRR3A8MPY1 467 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 C4orf51C9J302 202 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 PSMD12O00232 456 aaPredicted RBP9.59□□□□□ -0.87
LDLR-214ENST00000560628 TAPBPO15533 448 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 PHGDHO43175 533 aaKnown RBP9.59□□□□□ -0.87
LDLR-214ENST00000560628 RAD51CO43502 376 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 SERPINA6P08185 405 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 CCDC166P0CW27 439 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 RNH1P13489 461 aaKnown RBP9.59□□□□□ -0.87
LDLR-214ENST00000560628 JAK1P23458 1154 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 GMPRP36959 345 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 HNMTP50135 292 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 TAS2R50P59544 299 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 CDKL1Q00532 357 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 POU4F1Q01851 419 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 C2orf54Q08AI8 447 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 CALCOCO2Q13137 446 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 RUNX2Q13950 521 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 OR1C1Q15619 314 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 ZRSR2Q15696 482 aaKnown RBP9.59□□□□□ -0.87
LDLR-214ENST00000560628 NIPAL1Q6NVV3 410 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 C3orf62Q6ZUJ4 267 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 ADAMTSL2Q86TH1 951 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 RPS19BP1Q86WX3 136 aaKnown RBP9.59□□□□□ -0.87
LDLR-214ENST00000560628 GPSM1Q86YR5 675 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 LURAP1LQ8IV03 231 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.59□□□□□ -0.87
LDLR-214ENST00000560628 CA13Q8N1Q1 262 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 SLC5A8Q8N695 610 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 BBOF1Q8ND07 529 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 MDS2Q8NDY4 140 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 SPATA4Q8NEY3 305 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 RELTQ969Z4 430 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 ERP44Q9BS26 406 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 MCMBPQ9BTE3 642 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 DERL2Q9GZP9 239 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 TSPAN10Q9H1Z9 355 aaPredicted RBP9.59□□□□□ -0.87
LDLR-214ENST00000560628 NECTIN3Q9NQS3 549 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 NSMCE4AQ9NXX6 385 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 MYO7BQ6PIF6 2116 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 NOTCH2Q04721 2471 aa9.59□□□□□ -0.87
LDLR-214ENST00000560628 CROCCQ5TZA2 2017 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 FAM187AA6NFU0 413 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 NPIPA5E9PKD4 350 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 CCL21O00585 134 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 PRAMEF4O60810 478 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 FAM155BO75949 473 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 CD46P15529 392 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 GNAZP19086 355 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 HNRNPH1P31943 449 aaKnown RBP9.58□□□□□ -0.88
LDLR-214ENST00000560628 SLC6A12P48065 614 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 HSPA7P48741 367 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 STXBP1P61764 594 aaKnown RBP9.58□□□□□ -0.88
LDLR-214ENST00000560628 CBLBQ13191 982 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 SLBPQ14493 270 aaKnown RBP eCLIP9.58□□□□□ -0.88
LDLR-214ENST00000560628 TGFBIQ15582 683 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 OR4D1Q15615 310 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 MAPKAPK3Q16644 382 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 ZNF468Q5VIY5 522 aaPredicted RBP9.58□□□□□ -0.88
LDLR-214ENST00000560628 PRAMEF9Q5VWM5 478 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 SP5Q6BEB4 398 aaPredicted RBP9.58□□□□□ -0.88
LDLR-214ENST00000560628 TMIGD1Q6UXZ0 262 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 QSOX2Q6ZRP7 698 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 GALNTL5Q7Z4T8 443 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 MAATS1Q7Z4T9 603 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.58□□□□□ -0.88
LDLR-214ENST00000560628 C17orf53Q8N3J3 647 aaPredicted RBP9.58□□□□□ -0.88
LDLR-214ENST00000560628 SNX31Q8N9S9 440 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 ELP5Q8TE02 316 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 CDKL2Q92772 493 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 TSPAN17Q96FV3 270 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 PDLIM2Q96JY6 352 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 FAR2Q96K12 515 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 CLK4Q9HAZ1 481 aaKnown RBP9.58□□□□□ -0.88
LDLR-214ENST00000560628 POPDC3Q9HBV1 291 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 PRDM9Q9NQV7 894 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 WWOXQ9NZC7 414 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 GRHL1Q9NZI5 618 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 WHRNQ9P202 907 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 LRFN1Q9P244 771 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 TXNDC16Q9P2K2 825 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 COPG2Q9UBF2 871 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 NPIPA1Q9UND3 350 aa9.58□□□□□ -0.88
LDLR-214ENST00000560628 IGKV3D-11A0A0A0MRZ8 115 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 MYOCOSA0A1B0GUC4 107 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 TCRBV9S1A1TA0A576 114 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 TCRBV16S1A1N1A0A5B0 115 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 ARHGAP10A1A4S6 786 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 LRIT2A6NDA9 550 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 CLGNO14967 610 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 ZNHIT1O43257 154 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 ERI3O43414 337 aaKnown RBP9.57□□□□□ -0.88
LDLR-214ENST00000560628 NEURL1O76050 574 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 WISP3O95389 354 aaPredicted RBP9.57□□□□□ -0.88
LDLR-214ENST00000560628 SP1P08047 785 aa9.57□□□□□ -0.88
LDLR-214ENST00000560628 CD1DP15813 335 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms