RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CLEC6AQ6EIG7 209 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 PRMT9Q6P2P2 845 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 ABHD17CQ6PCB6 329 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 SPACA3Q8IXA5 215 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 IL22RA1Q8N6P7 574 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 METTL6Q8TCB7 284 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 SREK1Q8WXA9 508 aaKnown RBP20.65■□□□□ 0.9
SNX1-210ENST00000560260 MMABQ96EY8 250 aaPredicted RBP20.65■□□□□ 0.9
SNX1-210ENST00000560260 QRFPRQ96P65 431 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 DCBLD2Q96PD2 775 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 DPH2Q9BQC3 489 aaPredicted RBP20.65■□□□□ 0.9
SNX1-210ENST00000560260 REXO4Q9GZR2 422 aaKnown RBP20.65■□□□□ 0.9
SNX1-210ENST00000560260 ELOVL6Q9H5J4 265 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 ZNF304Q9HCX3 659 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 CTSFQ9UBX1 484 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 IL17BQ9UHF5 180 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 ADGRE2Q9UHX3 823 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 CFAP47Q6ZTR5 3102 aa20.65■□□□□ 0.9
SNX1-210ENST00000560260 FOXE1O00358 373 aaPredicted RBP20.64■□□□□ 0.89
SNX1-210ENST00000560260 RTCAO00442 366 aaKnown RBP20.64■□□□□ 0.89
SNX1-210ENST00000560260 KLK10O43240 276 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 LIFP15018 202 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 CHN1P15882 459 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 FBLP22087 321 aaKnown RBP20.64■□□□□ 0.89
SNX1-210ENST00000560260 HMOX2P30519 316 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 SERPINB5P36952 375 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 DLSTP36957 453 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 PLA2G16P53816 162 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 OLR1P78380 273 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 GALNT1Q10472 559 aaPredicted RBP20.64■□□□□ 0.89
SNX1-210ENST00000560260 IFT88Q13099 833 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 DNASE1L3Q13609 305 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 DSG2Q14126 1118 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 HERC3Q15034 1050 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 NCF4Q15080 339 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 DEPDC1Q5TB30 811 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 FAM69BQ5VUD6 431 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 MRPL14Q6P1L8 145 aaKnown RBP20.64■□□□□ 0.89
SNX1-210ENST00000560260 ZNF793Q6ZN11 406 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 ABHD13Q7L211 337 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 OR2L5Q8NG80 312 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 OR5T3Q8NGG3 340 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 PPP1R14CQ8TAE6 165 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 SELENOMQ8WWX9 145 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 CMTM7Q96FZ5 175 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 CNTNAP3BQ96NU0 1288 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 C17orf62Q9BQA9 187 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 SORBS1Q9BX66 1292 aaKnown RBP20.64■□□□□ 0.89
SNX1-210ENST00000560260 CNTNAP3Q9BZ76 1288 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 ANKHQ9HCJ1 492 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 WDR70Q9NW82 654 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 HCN3Q9P1Z3 774 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 PPT2Q9UMR5 302 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 SNX6Q9UNH7 406 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 SSUH2Q9Y2M2 353 aa20.64■□□□□ 0.89
SNX1-210ENST00000560260 MRPS18BQ9Y676 258 aaKnown RBP20.64■□□□□ 0.89
SNX1-210ENST00000560260 ACACBO00763 2458 aa20.63■□□□□ 0.89
SNX1-210ENST00000560260 TCN2P20062 427 aa20.63■□□□□ 0.89
SNX1-210ENST00000560260 AGXTP21549 392 aa20.63■□□□□ 0.89
SNX1-210ENST00000560260 RPS18P62269 152 aaKnown RBP20.63■□□□□ 0.89
SNX1-210ENST00000560260 BST1Q10588 318 aa20.63■□□□□ 0.89
SNX1-210ENST00000560260 ABRAXAS2Q15018 415 aa20.63■□□□□ 0.89
SNX1-210ENST00000560260 KANK2Q63ZY3 851 aa20.63■□□□□ 0.89
SNX1-210ENST00000560260 SCIMPQ6UWF3 145 aa20.63■□□□□ 0.89
SNX1-210ENST00000560260 ENDOVQ8N8Q3 282 aaKnown RBP20.63■□□□□ 0.89
SNX1-210ENST00000560260 SORT1Q99523 831 aa20.63■□□□□ 0.89
SNX1-210ENST00000560260 ZNF717Q9BY31 904 aaPredicted RBP20.63■□□□□ 0.89
SNX1-210ENST00000560260 DPH1Q9BZG8 443 aa20.63■□□□□ 0.89
SNX1-210ENST00000560260 IFT80Q9P2H3 777 aaPredicted RBP20.63■□□□□ 0.89
SNX1-210ENST00000560260 CDC14AQ9UNH5 594 aa20.63■□□□□ 0.89
SNX1-210ENST00000560260 URADA6NGE7 173 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 TMEM114B3SHH9 223 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 H0YIG0 161 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 PLPP1O14494 284 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 AZIN1O14977 448 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 EFSO43281 561 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 KRT6AP02538 564 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 KRT6BP04259 564 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 NR1D1P20393 614 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 CERS1P27544 350 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 ITPKBP27987 946 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 AVPR1BP47901 424 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 KRT6CP48668 564 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 ABCE1P61221 599 aaKnown RBP20.62■□□□□ 0.89
SNX1-210ENST00000560260 PHEXP78562 749 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 MLIPQ5VWP3 458 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 OVCH1Q7RTY7 1134 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 AGR3Q8TD06 166 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 COL26A1Q96A83 441 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 FKBP10Q96AY3 582 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 GPN2Q9H9Y4 310 aaPredicted RBP20.62■□□□□ 0.89
SNX1-210ENST00000560260 PRM3Q9NNZ6 103 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 PRDM7Q9NQW5 492 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 PSD3Q9NYI0 1048 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 ZDHHC2Q9UIJ5 367 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 FIS1Q9Y3D6 152 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 PTGDR2Q9Y5Y4 395 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 LAMA5O15230 3695 aa20.62■□□□□ 0.89
SNX1-210ENST00000560260 C21orf140B9A014 251 aa20.61■□□□□ 0.89
SNX1-210ENST00000560260 C9J4A7 227 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms