RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 C17orf64Q86WR6 236 aa17.04■□□□□ 0.32
SNX1-208ENST00000559844 PHACTR4Q8IZ21 702 aa17.04■□□□□ 0.32
SNX1-208ENST00000559844 SUMF1Q8NBK3 374 aa17.04■□□□□ 0.32
SNX1-208ENST00000559844 GPR156Q8NFN8 814 aa17.04■□□□□ 0.32
SNX1-208ENST00000559844 SMPDL3AQ92484 453 aa17.04■□□□□ 0.32
SNX1-208ENST00000559844 PDXPQ96GD0 296 aa17.04■□□□□ 0.32
SNX1-208ENST00000559844 CXorf56Q9H5V9 222 aa17.04■□□□□ 0.32
SNX1-208ENST00000559844 PCDHGA5Q9Y5G8 931 aa17.04■□□□□ 0.32
SNX1-208ENST00000559844 FRYLO94915 3013 aa17.04■□□□□ 0.32
SNX1-208ENST00000559844 RNF103-CHMP3A0A140T963 221 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 PRSS38A1L453 326 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 PATE3B3GLJ2 98 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 FAM58BPP0C7Q3 252 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 ACP5P13686 325 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 PTX3P26022 381 aaPredicted RBP17.03■□□□□ 0.32
SNX1-208ENST00000559844 SERPINB1P30740 379 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 NXPH1P58417 271 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 TXNL4AP83876 142 aaKnown RBP17.03■□□□□ 0.32
SNX1-208ENST00000559844 HKDC1Q2TB90 917 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 RD3Q7Z3Z2 195 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 SERPINA11Q86U17 422 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 PARGQ86W56 976 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 FAM129CQ86XR2 697 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 CBR4Q8N4T8 237 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 CEP76Q8TAP6 659 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 COQ8BQ96D53 544 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 PITHD1Q9GZP4 211 aaPredicted RBP17.03■□□□□ 0.32
SNX1-208ENST00000559844 ATP6V1HQ9UI12 483 aa17.03■□□□□ 0.32
SNX1-208ENST00000559844 PNMA8BQ9ULN7 279 aaPredicted RBP17.03■□□□□ 0.32
SNX1-208ENST00000559844 CLOCKO15516 846 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 DEAF1O75398 565 aaPredicted RBP17.02■□□□□ 0.32
SNX1-208ENST00000559844 RASAL1O95294 804 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 TNFAIP8O95379 198 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 NBL1P41271 181 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 ZNF542PQ5EBM4 170 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 TRIM61Q5EBN2 209 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 ERICH5Q6P6B1 374 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 R3HCC1LQ7Z5L2 792 aaKnown RBP17.02■□□□□ 0.32
SNX1-208ENST00000559844 EPHX4Q8IUS5 362 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 CHERPQ8IWX8 916 aaKnown RBP17.02■□□□□ 0.32
SNX1-208ENST00000559844 METTL4Q8N3J2 472 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 LMNTD1Q8N9Z9 388 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 OR1E3Q8WZA6 343 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 NCLNQ969V3 563 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 TSACCQ96A04 125 aaPredicted RBP17.02■□□□□ 0.32
SNX1-208ENST00000559844 SH3KBP1Q96B97 665 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 MIEF2Q96C03 454 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 AURKBQ96GD4 344 aaPredicted RBP17.02■□□□□ 0.32
SNX1-208ENST00000559844 PHF12Q96QT6 1004 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 FERD3LQ96RJ6 166 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 AIF1LQ9BQI0 150 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 RAB11FIP5Q9BXF6 653 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 BHLHE41Q9C0J9 482 aaPredicted RBP17.02■□□□□ 0.32
SNX1-208ENST00000559844 MAGIXQ9H6Y5 334 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 OLAHQ9NV23 265 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 UBAP1Q9NZ09 502 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 AHSPQ9NZD4 102 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 OAZ3Q9UMX2 235 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 AK5Q9Y6K8 562 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 V9GYQ6 96 aa17.02■□□□□ 0.32
SNX1-208ENST00000559844 ARHGAP10A1A4S6 786 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 GABRR3A8MPY1 467 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 CLIC1O00299 241 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 SCAMP1O15126 338 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 SH3BGRLO75368 114 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 CREG1O75629 220 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 TGFB1P01137 390 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 FUCA1P04066 466 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 LAMP1P11279 417 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 IL1RNP18510 177 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 IDSP22304 550 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 PPIBP23284 216 aaKnown RBP17.02■□□□□ 0.31
SNX1-208ENST00000559844 SRP54P61011 504 aaKnown RBP17.02■□□□□ 0.31
SNX1-208ENST00000559844 CTBSQ01459 385 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 SF1Q15637 639 aaKnown RBP17.02■□□□□ 0.31
SNX1-208ENST00000559844 ALG11Q2TAA5 492 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 COMMD6Q7Z4G1 85 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 C12orf66Q96MD2 445 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 SPNS1Q9H2V7 528 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 SMOC1Q9H4F8 434 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 REEP4Q9H6H4 257 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 CARS2Q9HA77 564 aaKnown RBP17.02■□□□□ 0.31
SNX1-208ENST00000559844 WASH6PQ9NQA3 447 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 FSCN3Q9NQT6 498 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 ATAD3AQ9NVI7 634 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 TAC3Q9UHF0 121 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 SUFUQ9UMX1 484 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 CORO2BQ9UQ03 480 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 SNX11Q9Y5W9 270 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 PCDH15Q96QU1 1955 aa17.02■□□□□ 0.31
SNX1-208ENST00000559844 TNFRSF10CO14798 259 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 ACOX3O15254 700 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 CPSF4O95639 269 aaKnown RBP17.01■□□□□ 0.31
SNX1-208ENST00000559844 B3GALT4O96024 378 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 MEF2AQ02078 507 aaPredicted RBP17.01■□□□□ 0.31
SNX1-208ENST00000559844 EIF2B5Q13144 721 aaKnown RBP17.01■□□□□ 0.31
SNX1-208ENST00000559844 SLC23A3Q6PIS1 610 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 ZNF621Q6ZSS3 439 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 FBXO30Q8TB52 745 aa17.01■□□□□ 0.31
SNX1-208ENST00000559844 SLC47A1Q96FL8 570 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms