RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 CARTPTQ16568 116 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 LRRC26Q2I0M4 334 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 PRSS55Q6UWB4 352 aaPredicted RBP15.63■□□□□ 0.09
SHMT2-231ENST00000557433 TSPAN33Q86UF1 283 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 CELF2-AS1Q8N7Q2 184 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 SIMC1Q8NDZ2 872 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 FAM46DQ8NEK8 389 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 CDC26Q8NHZ8 85 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 ASZ1Q8WWH4 475 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 RASSF5Q8WWW0 418 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 TP53INP1Q96A56 240 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 OR2A14Q96R47 310 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 N6AMT1Q9Y5N5 214 aa15.63■□□□□ 0.09
SHMT2-231ENST00000557433 ARHGAP33O14559 1287 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 PCDH7O60245 1069 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 CD22P20273 847 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 AQP1P29972 269 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 TNFSF8P32971 234 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 CRATP43155 626 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 RORCP51449 518 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 MVDP53602 400 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 SNRPGP62308 76 aaKnown RBP15.62■□□□□ 0.09
SHMT2-231ENST00000557433 RAE1P78406 368 aaKnown RBP15.62■□□□□ 0.09
SHMT2-231ENST00000557433 VEPH1Q14D04 833 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 PTGES3Q15185 160 aaKnown RBP15.62■□□□□ 0.09
SHMT2-231ENST00000557433 MED22Q15528 200 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 ATAD3CQ5T2N8 411 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 MPP7Q5T2T1 576 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 Q6ZNB5 142 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 IL17RCQ8NAC3 791 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 MAL2Q969L2 176 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 RMI1Q9H9A7 625 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 FZD3Q9NPG1 666 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 RLIMQ9NVW2 624 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 FTSJ1Q9UET6 329 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 TMEM98Q9Y2Y6 226 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 ZNF451Q9Y4E5 1061 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 ENPP4Q9Y6X5 453 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 CENPXA8MT69 81 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 A8MU76 341 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 FADS2P1A8MWK0 482 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 H3BQ06 376 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-231ENST00000557433 SLCO2B1O94956 709 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 CSTF2P33240 577 aaKnown RBP eCLIP15.62■□□□□ 0.09
SHMT2-231ENST00000557433 NKX2-5P52952 324 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-231ENST00000557433 CRISP1P54107 249 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 E2F2Q14209 437 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 ZFP69Q49AA0 526 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 ZNF517Q6ZMY9 492 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-231ENST00000557433 PTCHD4Q6ZW05 846 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 APCDD1Q8J025 514 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 NLGN4XQ8N0W4 816 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 WDR36Q8NI36 951 aaKnown RBP15.62■□□□□ 0.09
SHMT2-231ENST00000557433 FAM129BQ96TA1 746 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 MTERF1Q99551 399 aaKnown RBP15.62■□□□□ 0.09
SHMT2-231ENST00000557433 ATG10Q9H0Y0 220 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 ABCG8Q9H221 673 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 REEP4Q9H6H4 257 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 RNF167Q9H6Y7 350 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 SGK2Q9HBY8 427 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 TRPV5Q9NQA5 729 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 ACER3Q9NUN7 267 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 TAS2R9Q9NYW1 312 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 NDOR1Q9UHB4 597 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 TBC1D24Q9ULP9 559 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 ANGPT4Q9Y264 503 aa15.62■□□□□ 0.09
SHMT2-231ENST00000557433 CAB39Q9Y376 341 aaPredicted RBP15.62■□□□□ 0.09
SHMT2-231ENST00000557433 IQCMA0A1B0GVH7 501 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 C2orf78A6NCI8 922 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 HMX3A6NHT5 357 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 SCO2O43819 266 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 GADD45GO95257 159 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 OR1D2P34982 312 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 PTSQ03393 145 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 EEF1A2Q05639 463 aaKnown RBP15.61■□□□□ 0.09
SHMT2-231ENST00000557433 RUNX1T1Q06455 604 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 NCF4Q15080 339 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 BCL7AQ4VC05 210 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 SOWAHCQ53LP3 525 aaPredicted RBP15.61■□□□□ 0.09
SHMT2-231ENST00000557433 TMEM201Q5SNT2 666 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 ARMC4Q5T2S8 1044 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 TPGS2Q68CL5 300 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 ERAP2Q6P179 960 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 TMPRSS11AQ6ZMR5 421 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 VRK3Q8IV63 474 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 BBS7Q8IWZ6 715 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 OR8H2Q8N162 312 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 TCF25Q9BQ70 676 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 TSEN34Q9BSV6 310 aaKnown RBP15.61■□□□□ 0.09
SHMT2-231ENST00000557433 ASPNQ9BXN1 380 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 CPEB1Q9BZB8 566 aaKnown RBP15.61■□□□□ 0.09
SHMT2-231ENST00000557433 BRD9Q9H8M2 597 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 NOX1Q9Y5S8 564 aa15.61■□□□□ 0.09
SHMT2-231ENST00000557433 CTDSP2O14595 271 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 ADAM12O43184 909 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 PSIP1O75475 530 aaKnown RBP15.6■□□□□ 0.09
SHMT2-231ENST00000557433 ADAP00813 363 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 MAGP20916 626 aa15.6■□□□□ 0.09
SHMT2-231ENST00000557433 PSMA1P25786 263 aaKnown RBP15.6■□□□□ 0.09
SHMT2-231ENST00000557433 SPINT3P49223 89 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms