RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TACR1P25103 407 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 FASP25445 335 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 SHMT2P34897 504 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 RABIFP47224 123 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 PRKCQQ04759 706 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 ABHD18Q0P651 414 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 CLPPQ16740 277 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 CYP51A1Q16850 503 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 PUS10Q3MIT2 529 aaKnown RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 TBCELQ5QJ74 424 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 CCNYL2Q5T2Q4 361 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 CPTPQ5TA50 214 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 TMEM53Q6P2H8 277 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 ERICH5Q6P6B1 374 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 SYT13Q7L8C5 426 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 IFNEQ86WN2 208 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 PAPD5Q8NDF8 572 aaKnown RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 OR4K1Q8NGD4 311 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 TMIGD2Q96BF3 282 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 PPWD1Q96BP3 646 aaKnown RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 SLC6A17Q9H1V8 727 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 ANKHQ9HCJ1 492 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 SERHLQ9NQF3 203 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 IMP3Q9NV31 184 aaKnown RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 TRNAU1APQ9NX07 287 aaKnown RBP12.13□□□□□ -0.47
SHMT2-229ENST00000557348 VAPAQ9P0L0 249 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 EGFL7Q9UHF1 273 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 ATP6V1HQ9UI12 483 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 PSME2Q9UL46 239 aa12.13□□□□□ -0.47
SHMT2-229ENST00000557348 ELOVL7A1L3X0 281 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-229ENST00000557348 PRAMEF26H0Y7S4 382 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 SLC22A1O15245 554 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 DFNA5O60443 496 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 CLPXO76031 633 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 EPN2O95208 641 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 RASAL1O95294 804 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 BCL10O95999 233 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 RPL10P27635 214 aaKnown RBP12.12□□□□□ -0.47
SHMT2-229ENST00000557348 ATXN3P54252 364 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-229ENST00000557348 MTPNP58546 118 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 PRDX1Q06830 199 aaKnown RBP12.12□□□□□ -0.47
SHMT2-229ENST00000557348 GK3PQ14409 553 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 OXA1LQ15070 435 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 MLF2Q15773 248 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-229ENST00000557348 UGT8Q16880 541 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 FAM98BQ52LJ0 330 aaKnown RBP12.12□□□□□ -0.47
SHMT2-229ENST00000557348 GLYATQ6IB77 296 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 ANKRD26P1Q6NSI1 321 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 TMEM92Q6UXU6 159 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 COMMD6Q7Z4G1 85 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 FAM124AQ86V42 546 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 SPPL2CQ8IUH8 684 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 TRPV3Q8NET8 790 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 CANT1Q8WVQ1 401 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 ZFPM2Q8WW38 1151 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 SLC22A18Q96BI1 424 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 FAM120BQ96EK7 910 aaKnown RBP12.12□□□□□ -0.47
SHMT2-229ENST00000557348 VMP1Q96GC9 406 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 IL17FQ96PD4 163 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 PANX1Q96RD7 426 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 CPPED1Q9BRF8 314 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-229ENST00000557348 DUSP26Q9BV47 211 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 EBPLQ9BY08 206 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 UGT2B28Q9BY64 529 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 REEP4Q9H6H4 257 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 KAT8Q9H7Z6 458 aaKnown RBP12.12□□□□□ -0.47
SHMT2-229ENST00000557348 MOV10Q9HCE1 1003 aaKnown RBP12.12□□□□□ -0.47
SHMT2-229ENST00000557348 FGF22Q9HCT0 170 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 OR6C2Q9NZP2 312 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 ADAM29Q9UKF5 820 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 PCDHGB4Q9UN71 923 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 KCNK6Q9Y257 313 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 PCDHB14Q9Y5E9 798 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 PCDHGB5Q9Y5G0 923 aa12.12□□□□□ -0.47
SHMT2-229ENST00000557348 MYO9BQ13459 2157 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 C10orf142B7Z368 130 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 BOLA2-SMG1P6H3BVE0 249 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 RNASET2O00584 256 aaKnown RBP12.11□□□□□ -0.47
SHMT2-229ENST00000557348 ZNF217O75362 1048 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 RETP07949 1114 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 IL1RNP18510 177 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 CAPGP40121 348 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 RAE1P78406 368 aaKnown RBP12.11□□□□□ -0.47
SHMT2-229ENST00000557348 OCA2Q04671 838 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 NFATC3Q12968 1075 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 ATP6AP1Q15904 470 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 RPE65Q16518 533 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 NRF1Q16656 503 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 RBM48Q5RL73 367 aaKnown RBP12.11□□□□□ -0.47
SHMT2-229ENST00000557348 OR4F3Q6IEY1 312 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 ZNF773Q6PK81 442 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 ENPP7Q6UWV6 458 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 SERPINA11Q86U17 422 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 ZNF548Q8NEK5 533 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-229ENST00000557348 OR13F1Q8NGS4 319 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 LRTOMTQ8WZ04 291 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 COQ8BQ96D53 544 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 ZNF764Q96H86 408 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-229ENST00000557348 REXO5Q96IC2 774 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms