RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CLCA1A8K7I4 914 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 GTPBP1O00178 669 aaKnown RBP13.32□□□□□ -0.28
SHMT2-226ENST00000556825 PHYHO14832 338 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 PEX10O60683 326 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 HIST1H2AGP0C0S8 130 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-226ENST00000556825 GNSP15586 552 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 PTPRAP18433 802 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 HIST1H2ADP20671 130 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 PIK3CGP48736 1102 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 WNT7BP56706 349 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 CUL2Q13617 745 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 TSTQ16762 297 aaKnown RBP13.32□□□□□ -0.28
SHMT2-226ENST00000556825 HIST2H2AA3Q6FI13 130 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 PGAP1Q75T13 922 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 CCDC71Q8IV32 467 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-226ENST00000556825 DENND6AQ8IWF6 608 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 RNF113BQ8IZP6 322 aaKnown RBP13.32□□□□□ -0.28
SHMT2-226ENST00000556825 TMEM145Q8NBT3 493 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 ZDHHC1Q8WTX9 485 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 RHBDF1Q96CC6 855 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 SCMH1Q96GD3 660 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 HIST1H2AHQ96KK5 128 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 NELL2Q99435 816 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 HIST1H2AJQ99878 128 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 KLHL1Q9NR64 748 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 MARK1Q9P0L2 795 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 UTS2RQ9UKP6 389 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 USP18Q9UMW8 372 aa13.32□□□□□ -0.28
SHMT2-226ENST00000556825 C5orf52A6NGY3 159 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 AOC2O75106 756 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 STX11O75558 287 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 PAK4O96013 591 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-226ENST00000556825 CRYBA1P05813 215 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 SLC35E2BP0CK96 405 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 PBX3P40426 434 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 DAPP51397 102 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 AGFG1P52594 562 aaKnown RBP13.31□□□□□ -0.28
SHMT2-226ENST00000556825 MC2RQ01718 297 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 RPS6KA2Q15349 733 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 SPDYE7PQ495Y7 208 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 PRAMEF13Q5VWM6 474 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 C9orf131Q5VYM1 1079 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 FAM198BQ6UWH4 519 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 GDPGP1Q6ZNW5 385 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 C15orf39Q6ZRI6 1047 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 NAGSQ8N159 534 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 NLGN1Q8N2Q7 840 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 Q8N402 240 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 ATPAF2Q8N5M1 289 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 AVL9Q8NBF6 648 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 ATP6V1C2Q8NEY4 427 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 SCARB1Q8WTV0 552 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 CHURC1Q8WUH1 139 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 ZNF419Q96HQ0 510 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-226ENST00000556825 GMCL1Q96IK5 515 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 GPR22Q99680 433 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 PITX2Q99697 317 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 KCNJ15Q99712 375 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 APOL2Q9BQE5 337 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 DLL4Q9NR61 685 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 SPASTQ9UBP0 616 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 LEF1Q9UJU2 399 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-226ENST00000556825 STUB1Q9UNE7 303 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 MEIKINA0A087WXM9 373 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 KLRG2A4D1S0 409 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-226ENST00000556825 H3BM21 787 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 HOXA2O43364 376 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 RAD1O60671 282 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 LGI1O95970 557 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 SERPINA1P01009 418 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 CXCL3P19876 107 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 PTGER2P43116 358 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 HSPA7P48741 367 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 EPHA4P54764 986 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 KIAA1024LP59773 190 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 CYP24A1Q07973 514 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 SPP2Q13103 211 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 FAM83EQ2M2I3 478 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 SUPT20HL1Q3ZLR7 823 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 KIAA0319Q5VV43 1072 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 AFTPHQ6ULP2 937 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 HSDL2Q6YN16 418 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 DPPA2Q7Z7J5 298 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 FTMTQ8N4E7 242 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 DNAJC22Q8N4W6 341 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 MOSPD2Q8NHP6 518 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 CA5BP1Q8WTZ4 195 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 LRRN4Q8WUT4 740 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 PEX11GQ96HA9 241 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 PARK7Q99497 189 aaKnown RBP13.31□□□□□ -0.28
SHMT2-226ENST00000556825 TMEM43Q9BTV4 400 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 RHBGQ9H310 441 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 MVB12BQ9H7P6 319 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 SLAMF8Q9P0V8 285 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 LIMD1Q9UGP4 676 aa13.31□□□□□ -0.28
SHMT2-226ENST00000556825 GRXCR2A6NFK2 248 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 SGK494L7N484 410 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 TCAPO15273 167 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 RGS11O94810 467 aa13.3□□□□□ -0.28
SHMT2-226ENST00000556825 C1RP00736 705 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms