RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 ZIM2Q9NZV7 527 aa9.72□□□□□ -0.85
SRP54-208ENST00000555557 MRPS2Q9Y399 296 aaKnown RBP9.72□□□□□ -0.85
SRP54-208ENST00000555557 MN1Q10571 1320 aaPredicted RBP9.71□□□□□ -0.85
SRP54-208ENST00000555557 ASCC3Q8N3C0 2202 aaKnown RBP9.71□□□□□ -0.85
SRP54-208ENST00000555557 OTOGLQ3ZCN5 2332 aa9.71□□□□□ -0.85
SRP54-208ENST00000555557 EP300Q09472 2414 aaPredicted RBP9.71□□□□□ -0.85
SRP54-208ENST00000555557 B2RBV5 119 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 AIM2O14862 343 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 TMPRSS11DO60235 418 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 SEMA3DO95025 777 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 ZBTB11O95625 1053 aaPredicted RBP9.71□□□□□ -0.86
SRP54-208ENST00000555557 CPNE6O95741 557 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 SNRPB2P08579 225 aaKnown RBP9.71□□□□□ -0.86
SRP54-208ENST00000555557 ZNF888P0CJ79 500 aaPredicted RBP9.71□□□□□ -0.86
SRP54-208ENST00000555557 CAPN3P20807 821 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 CALB2P22676 271 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 TGM1P22735 817 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 NBL1P41271 181 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 SSR2P43308 183 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 ACADVLP49748 655 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 DUSP3P51452 185 aaPredicted RBP9.71□□□□□ -0.86
SRP54-208ENST00000555557 POLR2JP52435 117 aaKnown RBP9.71□□□□□ -0.86
SRP54-208ENST00000555557 CLDN8P56748 225 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 NCALDP61601 193 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 BTN3A2P78410 334 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 MC1RQ01726 317 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 CSRP2Q16527 193 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 ZC3H12BQ5HYM0 836 aaKnown RBP9.71□□□□□ -0.86
SRP54-208ENST00000555557 WASHC2DQ5SRD0 308 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 CCNYL2Q5T2Q4 361 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 ANKRD26P1Q6NSI1 321 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 ABHD17CQ6PCB6 329 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 BLOC1S3Q6QNY0 202 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 SHISA5Q8N114 240 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 MMP21Q8N119 569 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 DTWD1Q8N5C7 304 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 CSNK1A1LQ8N752 337 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 CAMKVQ8NCB2 501 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 OR2L5Q8NG80 312 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 OR8K5Q8NH50 307 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 UTP15Q8TED0 518 aaKnown RBP9.71□□□□□ -0.86
SRP54-208ENST00000555557 SLC7A6OSQ96CW6 309 aaPredicted RBP9.71□□□□□ -0.86
SRP54-208ENST00000555557 RCN3Q96D15 328 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 THAP11Q96EK4 314 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 METTL2AQ96IZ6 378 aaKnown RBP9.71□□□□□ -0.86
SRP54-208ENST00000555557 TMEM74Q96NL1 305 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 NPAS2Q99743 824 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 SLC52A3Q9NQ40 469 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 PRDM7Q9NQW5 492 aa9.71□□□□□ -0.86
SRP54-208ENST00000555557 FBP2O00757 339 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 DNAJB6O75190 326 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 JAK1P23458 1154 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 GABRA4P48169 554 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 MRPL19P49406 292 aaKnown RBP9.7□□□□□ -0.86
SRP54-208ENST00000555557 ARL4DP49703 201 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 TAS2R50P59544 299 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 STXBP1P61764 594 aaKnown RBP9.7□□□□□ -0.86
SRP54-208ENST00000555557 HSD11B2P80365 405 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 ZNF763Q0D2J5 394 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 SQSTM1Q13501 440 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 GPR19Q15760 415 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 AASDHQ4L235 1098 aaPredicted RBP9.7□□□□□ -0.86
SRP54-208ENST00000555557 TIGD2Q4W5G0 525 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 TMEM35AQ53FP2 167 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 CCDC157Q569K6 752 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 SPANXN4Q5MJ08 99 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 TRIM40Q6P9F5 258 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 PRSS41Q7RTY9 318 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 PARP9Q8IXQ6 854 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 KIF2BQ8N4N8 673 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 C16orf78Q8WTQ4 265 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 UCN3Q969E3 161 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 SPDL1Q96EA4 605 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 KCNC2Q96PR1 638 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 TACO1Q9BSH4 297 aaKnown RBP9.7□□□□□ -0.86
SRP54-208ENST00000555557 TUBB6Q9BUF5 446 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 KCNH6Q9H252 994 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 TXLNGQ9NUQ3 528 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 SIRT5Q9NXA8 310 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 FTSJ1Q9UET6 329 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 MCM8Q9UJA3 840 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 IGHV5-10-1A0A0J9YXX1 117 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 FAM234BA2RU67 622 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 IL3P08700 152 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 ACPPP15309 386 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 FOLR1P15328 257 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 IL1RNP18510 177 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 ATP5A1P25705 553 aaKnown RBP9.7□□□□□ -0.86
SRP54-208ENST00000555557 CERS1P27544 350 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 PRDX6P30041 224 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 MAPK12P53778 367 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 KCNK10P57789 538 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 SLC25A3Q00325 362 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 PLIN5Q00G26 463 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 SLC14A1Q13336 389 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 RCAN2Q14206 197 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 HERC3Q15034 1050 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 PGS1Q32NB8 556 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 INAVAQ3KP66 663 aa9.7□□□□□ -0.86
SRP54-208ENST00000555557 FAM174BQ3ZCQ3 159 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms