RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 PHEXP78562 749 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 ITGA7Q13683 1181 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 CCDC6Q16204 474 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 CA9Q16790 459 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 ITPRIPL2Q3MIP1 535 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 UGT3A2Q3SY77 523 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 MCMDC2Q4G0Z9 681 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 TCEAL5Q5H9L2 206 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 WDR38Q5JTN6 314 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 TCTE1Q5JU00 501 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 DCAF10Q5QP82 559 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 CYP4A22Q5TCH4 519 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 STPG1Q5TH74 334 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 ZNF449Q6P9G9 518 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 SHQ1Q6PI26 577 aaKnown RBP1.39□□□□□ -2.19
PRPF39-208ENST00000554785 TRAT1Q6PIZ9 186 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 DCLRE1AQ6PJP8 1040 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 PET117Q6UWS5 81 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 C11orf57Q6ZUT1 292 aaPredicted RBP1.39□□□□□ -2.19
PRPF39-208ENST00000554785 TRMT1LQ7Z2T5 733 aaKnown RBP1.39□□□□□ -2.19
PRPF39-208ENST00000554785 ABI3BPQ7Z7G0 1075 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 STPG4Q8N801 248 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 MAPKAPK5-AS1Q8N8E1 139 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 KLHDC9Q8NEP7 349 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 OLIG1Q8TAK6 271 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 DEPDC1BQ8WUY9 529 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 WBP2Q969T9 261 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 FAM162AQ96A26 154 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 PGLYRP2Q96PD5 576 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 RAD9AQ99638 391 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 KATNB1Q9BVA0 655 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 LAT2Q9GZY6 243 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 MMP28Q9H239 520 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 MFSD1Q9H3U5 465 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 FN3KQ9H479 309 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 ZWILCHQ9H900 591 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 SDR39U1Q9NRG7 319 aaPredicted RBP1.39□□□□□ -2.19
PRPF39-208ENST00000554785 MRGBPQ9NV56 204 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 HYPKQ9NX55 129 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 CHCHD3Q9NX63 227 aaKnown RBP1.39□□□□□ -2.19
PRPF39-208ENST00000554785 AATFQ9NY61 560 aaKnown RBP eCLIP1.39□□□□□ -2.192e-7■■■■■ 32.8
PRPF39-208ENST00000554785 ZKSCAN7Q9P0L1 754 aaPredicted RBP1.39□□□□□ -2.19
PRPF39-208ENST00000554785 CACNG4Q9UBN1 327 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 ZDHHC2Q9UIJ5 367 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 TBX21Q9UL17 535 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 BARX2Q9UMQ3 279 aaPredicted RBP1.39□□□□□ -2.19
PRPF39-208ENST00000554785 SNX7Q9UNH6 387 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 TMED3Q9Y3Q3 217 aa1.39□□□□□ -2.19
PRPF39-208ENST00000554785 PIEZO2Q9H5I5 2752 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 FOCADQ5VW36 1801 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 KALRNO60229 2985 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 A0A087WV48 116 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 IGLV9-49A0A0B4J1Y8 123 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 TRAV34A0A0B4J273 112 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 LOC101059948A0A1B0GTJ6 334 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 HTR3EA5X5Y0 456 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 ANKRD61A6NGH8 418 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 CLIC2O15247 247 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 AP5Z1O43299 807 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 CIDEAO60543 219 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 SLC22A3O75751 556 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 CNMDO75829 334 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 FLOT1O75955 427 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 PAK4O96013 591 aaPredicted RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 TSHBP01222 138 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 GBAP04062 536 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 PLA2G4BP0C869 781 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 IRF2P14316 349 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 EPCAMP16422 314 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 EFNA1P20827 205 aaPredicted RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 ACAT1P24752 427 aaKnown RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 HOXC13P31276 330 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 HSD17B3P37058 310 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 BMXP51813 675 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 BACE1P56817 501 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 UBASH3AP57075 661 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 DLK1P80370 383 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 RBP5P82980 135 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 ZNF415Q09FC8 603 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 BFSP1Q12934 665 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 SCARB2Q14108 478 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 GCKRQ14397 625 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 GRB14Q14449 540 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 TAF13Q15543 124 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 ODF4Q2M2E3 257 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 MRGPRG-AS1Q2M3A8 158 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 ALDH1L2Q3SY69 923 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 ZC2HC1CQ53FD0 456 aaPredicted RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 SPDYCQ5MJ68 293 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 SFMBT2Q5VUG0 894 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 SLC35E4Q6ICL7 350 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 CAVIN1Q6NZI2 390 aaKnown RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 MOXD1Q6UVY6 613 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 ENPP7Q6UWV6 458 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 SPATA21Q7Z572 469 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 DNAJB7Q7Z6W7 309 aaPredicted RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 GLRX5Q86SX6 157 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 TRPT1Q86TN4 253 aaKnown RBP1.38□□□□□ -2.19
PRPF39-208ENST00000554785 FAM219AQ8IW50 185 aa1.38□□□□□ -2.19
PRPF39-208ENST00000554785 CDK20Q8IZL9 346 aa1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms