RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 DDX39BQ13838 428 aaKnown RBP13.36□□□□□ -0.27
PTCH1-226ENST00000553011 SSPNQ14714 243 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 RBBP7Q16576 425 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 ADPRMQ3LIE5 342 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 CCDC153Q494R4 210 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 PCSK4Q6UW60 755 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 PPP1R32Q7Z5V6 425 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 MRGPREQ86SM8 312 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 RAB43Q86YS6 212 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 SLC22A9Q8IVM8 553 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 CCDC63Q8NA47 563 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 OR51Q1Q8NH59 317 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 TRPC4APQ8TEL6 797 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 PPP4R1Q8TF05 950 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 GAL3ST3Q96A11 431 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 F2RL3Q96RI0 385 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 MESP1Q9BRJ9 268 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 CRB3Q9BUF7 120 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 NTMT1Q9BV86 223 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 MS4A8Q9BY19 250 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 PRM3Q9NNZ6 103 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 MKS1Q9NXB0 559 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 NXT1Q9UKK6 140 aaKnown RBP13.36□□□□□ -0.27
PTCH1-226ENST00000553011 MAN2B2Q9Y2E5 1009 aa13.36□□□□□ -0.27
PTCH1-226ENST00000553011 H0YIV9 168 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 RGS16O15492 202 aaPredicted RBP13.35□□□□□ -0.27
PTCH1-226ENST00000553011 ERI3O43414 337 aaKnown RBP13.35□□□□□ -0.27
PTCH1-226ENST00000553011 CHST10O43529 356 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 TGFB1P01137 390 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 IMPDH1P20839 514 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 XCR1P46094 333 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 EFNA3P52797 238 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 PLA2G16P53816 162 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 BTN3A2P78410 334 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 CLCQ05315 142 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 CHAF1BQ13112 559 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 ZRSR2Q15696 482 aaKnown RBP13.35□□□□□ -0.27
PTCH1-226ENST00000553011 CPZQ66K79 652 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 BORAQ6PGQ7 559 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 MILR1Q7Z6M3 343 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 ARMC2Q8NEN0 867 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 OR2L5Q8NG80 312 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 OR4F6Q8NGB9 312 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 HUS1BQ8NHY5 278 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 THAP4Q8WY91 577 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 L3HYPDHQ96EM0 354 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 PEX11GQ96HA9 241 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 MTERF1Q99551 399 aaKnown RBP13.35□□□□□ -0.27
PTCH1-226ENST00000553011 RBCK1Q9BYM8 510 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 TGIF2Q9GZN2 237 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 REXO4Q9GZR2 422 aaKnown RBP13.35□□□□□ -0.27
PTCH1-226ENST00000553011 IQCGQ9H095 443 aaKnown RBP13.35□□□□□ -0.27
PTCH1-226ENST00000553011 CENPHQ9H3R5 247 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 C14orf105Q9NVL8 296 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 SLC17A7Q9P2U7 560 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 C3orf18Q9UK00 162 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 ZNF225Q9UK10 706 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 PLLPQ9Y342 182 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 PCDHGA11Q9Y5H2 935 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 KCNMB2Q9Y691 235 aa13.35□□□□□ -0.27
PTCH1-226ENST00000553011 OR2W5A6NFC9 320 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 ARGFXA6NJG6 315 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 IDSB3KWA1 339 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 ERVH48-1M5A8F1 160 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 CTIFO43310 598 aaKnown RBP13.34□□□□□ -0.27
PTCH1-226ENST00000553011 BMP10O95393 424 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 OTCP00480 354 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 FAM87AP0C7U9 286 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 CPA3P15088 417 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 MMP11P24347 488 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 SERPINB1P30740 379 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 CCR10P46092 362 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 NEK2P51955 445 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 EMP2P54851 167 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 RPS13P62277 151 aaKnown RBP13.34□□□□□ -0.27
PTCH1-226ENST00000553011 SKP1P63208 163 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 FAAH2Q6GMR7 532 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 LETMD1Q6P1Q0 360 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 TRIM40Q6P9F5 258 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 ABHD17CQ6PCB6 329 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 LRIG3Q6UXM1 1119 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 CCNYL1Q8N7R7 359 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 WDR20Q8TBZ3 569 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 RDH11Q8TC12 318 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 APOBEC4Q8WW27 367 aaKnown RBP13.34□□□□□ -0.27
PTCH1-226ENST00000553011 FAR2Q96K12 515 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 QRFPRQ96P65 431 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 BBC3Q96PG8 261 aaPredicted RBP13.34□□□□□ -0.27
PTCH1-226ENST00000553011 FAM111AQ96PZ2 611 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 UBL7Q96S82 380 aaPredicted RBP13.34□□□□□ -0.27
PTCH1-226ENST00000553011 SMC6Q96SB8 1091 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 TRIM55Q9BYV6 548 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 OR51B5Q9H339 312 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 GSTO2Q9H4Y5 243 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 DMRT3Q9NQL9 472 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 SEMA3GQ9NS98 782 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 TSC22D4Q9Y3Q8 395 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 HS3ST3B1Q9Y662 390 aa13.34□□□□□ -0.27
PTCH1-226ENST00000553011 MAGEB17A8MXT2 336 aa13.33□□□□□ -0.28
PTCH1-226ENST00000553011 MASP2O00187 686 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms