RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 A8MX80 341 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 SLC30A4O14863 429 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 SHOXO15266 292 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 MMP20O60882 483 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 KATNA1O75449 491 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 MED26O95402 600 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 ARNTP27540 789 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 CD38P28907 300 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 MAP2K4P45985 399 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 POLD2P49005 469 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 CLK1P49759 484 aaKnown RBP7.38□□□□□ -1.23
LIMA1-216ENST00000552909 EEFSECP57772 596 aaKnown RBP7.38□□□□□ -1.23
LIMA1-216ENST00000552909 ISL1P61371 349 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 PRKCDQ05655 676 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 BCL2L1Q07817 233 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 FADDQ13158 208 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 KCNAB2Q13303 367 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 GALNT3Q14435 633 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 ZNF460Q14592 562 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 HLA-BQ31612 363 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 UGT3A2Q3SY77 523 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 ZNF470Q6ECI4 717 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 CYP20A1Q6UW02 462 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 CLYBLQ8N0X4 340 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 TMEM145Q8NBT3 493 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 RPL3LQ92901 407 aaKnown RBP7.38□□□□□ -1.23
LIMA1-216ENST00000552909 TADA1Q96BN2 335 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 ECHDC3Q96DC8 303 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 OMA1Q96E52 524 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 WRAP53Q9BUR4 548 aaKnown RBP7.38□□□□□ -1.23
LIMA1-216ENST00000552909 GON7Q9BXV9 100 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 SLC17A9Q9BYT1 436 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 SLC7A5P2Q9GIP4 190 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 GAREM1Q9H706 876 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 ERVK-18Q9QC07 812 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 FNDC3AQ9Y2H6 1198 aaKnown RBP7.38□□□□□ -1.23
LIMA1-216ENST00000552909 TPRKBQ9Y3C4 175 aa7.38□□□□□ -1.23
LIMA1-216ENST00000552909 GOLGA4Q13439 2230 aaKnown RBP7.38□□□□□ -1.23
LIMA1-216ENST00000552909 A0A087X1B8 175 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 LOC285095A0A1B0GVY8 99 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 KRT87PA6NCN2 255 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 POM121BA6NF01 834 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 CLDN24A6NM45 220 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 C9JVG2 144 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 hCG_2039718K7EN88 272 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 XPNPEP2O43895 674 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 IPO13O94829 963 aaKnown RBP7.37□□□□□ -1.23
LIMA1-216ENST00000552909 CAPN1P07384 714 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 SYPP08247 313 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 RAP2AP10114 183 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 CES1P23141 567 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 HRH2P25021 359 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 SERPINA4P29622 427 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 RYKP34925 604 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 PTGS2P35354 604 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 GGT5P36269 586 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 UGT2B10P36537 528 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 LIMK1P53667 647 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 AP2S1P53680 142 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-216ENST00000552909 RPS21P63220 83 aaKnown RBP7.37□□□□□ -1.23
LIMA1-216ENST00000552909 TAGLNQ01995 201 aaKnown RBP7.37□□□□□ -1.23
LIMA1-216ENST00000552909 TARDBPQ13148 414 aaKnown RBP eCLIP7.37□□□□□ -1.23
LIMA1-216ENST00000552909 RPS6KA2Q15349 733 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 TBRG1Q3YBR2 411 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 FAM98BQ52LJ0 330 aaKnown RBP7.37□□□□□ -1.23
LIMA1-216ENST00000552909 PCID2Q5JVF3 399 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 ZNF691Q5VV52 312 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 CLEC6AQ6EIG7 209 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 RABEPKQ7Z6M1 372 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 GLRX5Q86SX6 157 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 NOXA1Q86UR1 476 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 CEP97Q8IW35 865 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 HEXDCQ8WVB3 486 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 PEX13Q92968 403 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 RAB7BQ96AH8 199 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 REXO5Q96IC2 774 aaKnown RBP7.37□□□□□ -1.23
LIMA1-216ENST00000552909 BMFQ96LC9 184 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 RBM4BQ9BQ04 359 aaKnown RBP7.37□□□□□ -1.23
LIMA1-216ENST00000552909 AIFM2Q9BRQ8 373 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 RBM4Q9BWF3 364 aaKnown RBP7.37□□□□□ -1.23
LIMA1-216ENST00000552909 NUAK2Q9H093 628 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 AKTIPQ9H8T0 292 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 SMURF2Q9HAU4 748 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 ARNT2Q9HBZ2 717 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 SYTL2Q9HCH5 934 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 ACOXLQ9NUZ1 547 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 WDR70Q9NW82 654 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 TAS2R9Q9NYW1 312 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 USE1Q9NZ43 259 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 PCDHB9Q9Y5E1 797 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 PCDHGA10Q9Y5H3 936 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 OAS3Q9Y6K5 1087 aaKnown RBP7.37□□□□□ -1.23
LIMA1-216ENST00000552909 A3GALT2U3KPV4 340 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 A0A0G2JMP0 313 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 FAM95CA0A1B0GW59 222 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 TSPAN11A1L157 253 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 A8MT66 165 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 UPK3BL1B0FP48 263 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 UPK3BL2E5RIL1 263 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 PRAMEF26H0Y7S4 382 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms