RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 AHCTF1Q8WYP5 2266 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 ZNF860A6NHJ4 632 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 MEN1O00255 615 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 RTCAO00442 366 aaKnown RBP20.12■□□□□ 0.81
VPS29-206ENST00000549578 PIP5K1BO14986 540 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 KLHL18O94889 574 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 HSD3B1P14060 373 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 ITGAXP20702 1163 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 HSD3B2P26439 372 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 OR1D4P47884 311 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 CUL3Q13618 768 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 HERC3Q15034 1050 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 TBC1D25Q3MII6 688 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 TMEM35AQ53FP2 167 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 ZNF385CQ66K41 422 aaPredicted RBP20.12■□□□□ 0.81
VPS29-206ENST00000549578 TRIM40Q6P9F5 258 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 ABHD17CQ6PCB6 329 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 FAM47EQ6ZV65 393 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 DDIASQ8IXT1 998 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 DSELQ8IZU8 1212 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 PROKR1Q8TCW9 393 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 SORBS1Q9BX66 1292 aaKnown RBP20.12■□□□□ 0.81
VPS29-206ENST00000549578 PSD3Q9NYI0 1048 aa20.12■□□□□ 0.81
VPS29-206ENST00000549578 STMND1H3BQB6 276 aa20.11■□□□□ 0.81
VPS29-206ENST00000549578 SGK494L7N484 410 aa20.11■□□□□ 0.81
VPS29-206ENST00000549578 PLPP1O14494 284 aa20.11■□□□□ 0.81
VPS29-206ENST00000549578 JUNP05412 331 aaKnown RBP20.11■□□□□ 0.81
VPS29-206ENST00000549578 LINC00032P0C843 101 aa20.11■□□□□ 0.81
VPS29-206ENST00000549578 KITP10721 976 aa20.11■□□□□ 0.81
VPS29-206ENST00000549578 MDH1P40925 334 aaKnown RBP20.11■□□□□ 0.81
VPS29-206ENST00000549578 RAP1GDS1P52306 607 aa20.11■□□□□ 0.81
VPS29-206ENST00000549578 BTN3A2P78410 334 aa20.11■□□□□ 0.81
VPS29-206ENST00000549578 ZNF33BQ06732 778 aa20.11■□□□□ 0.81
VPS29-206ENST00000549578 SLC9A5Q14940 896 aa20.11■□□□□ 0.81
VPS29-206ENST00000549578 PDCD2Q16342 344 aaPredicted RBP20.11■□□□□ 0.81
VPS29-206ENST00000549578 LCN10Q6JVE6 187 aa20.11■□□□□ 0.81
VPS29-206ENST00000549578 C6orf15Q6UXA7 325 aaPredicted RBP20.11■□□□□ 0.81
VPS29-206ENST00000549578 RGS9BPQ6ZS82 235 aa20.11■□□□□ 0.81
VPS29-206ENST00000549578 TRIM46Q7Z4K8 759 aa20.11■□□□□ 0.81
VPS29-206ENST00000549578 GBP7Q8N8V2 638 aaPredicted RBP20.11■□□□□ 0.81
VPS29-206ENST00000549578 MMABQ96EY8 250 aaPredicted RBP20.11■□□□□ 0.81
VPS29-206ENST00000549578 ZNF578Q96N58 590 aaPredicted RBP20.11■□□□□ 0.81
VPS29-206ENST00000549578 LRFN5Q96NI6 719 aa20.11■□□□□ 0.81
VPS29-206ENST00000549578 CENPKQ9BS16 269 aa20.11■□□□□ 0.81
VPS29-206ENST00000549578 MRPL1Q9BYD6 325 aaKnown RBP20.11■□□□□ 0.81
VPS29-206ENST00000549578 SERTM1A2A2V5 107 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 TCP11X1B4DZS4 312 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 GALR3O60755 368 aaPredicted RBP20.1■□□□□ 0.81
VPS29-206ENST00000549578 CD82P27701 267 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 GYS2P54840 703 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 TGM3Q08188 693 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 ABHD18Q0P651 414 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 FAM199XQ6PEV8 388 aaPredicted RBP20.1■□□□□ 0.81
VPS29-206ENST00000549578 MR1Q95460 341 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 RGMAQ96B86 450 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 MVB12AQ96EY5 273 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 FAR2Q96K12 515 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 C7orf26Q96N11 449 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 KCNC2Q96PR1 638 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 LHX9Q9NQ69 397 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 PRDM7Q9NQW5 492 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 FAM53CQ9NYF3 392 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 VPS29Q9UBQ0 182 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 ACSL6Q9UKU0 697 aa20.1■□□□□ 0.81
VPS29-206ENST00000549578 FRYQ5TBA9 3013 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 RAD1O60671 282 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 RDH16O75452 317 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 NSA2O95478 260 aaKnown RBP20.09■□□□□ 0.81
VPS29-206ENST00000549578 KLK3P07288 261 aaPredicted RBP20.09■□□□□ 0.81
VPS29-206ENST00000549578 AVPR1BP47901 424 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 OLR1P78380 273 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 DCDP81605 110 aaKnown RBP20.09■□□□□ 0.81
VPS29-206ENST00000549578 IMPG1Q17R60 797 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 NKAIN1Q4KMZ8 207 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 PRMT9Q6P2P2 845 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 ZNF793Q6ZN11 406 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 CRLF3Q8IUI8 442 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 NLGN4XQ8N0W4 816 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 SHISA5Q8N114 240 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 AMER3Q8N944 861 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 SRFBP1Q8NEF9 429 aaKnown RBP20.09■□□□□ 0.81
VPS29-206ENST00000549578 NLGN4YQ8NFZ3 816 aaPredicted RBP20.09■□□□□ 0.81
VPS29-206ENST00000549578 OR2T11Q8NH01 316 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 GATA6Q92908 595 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 PPP1R36Q96LQ0 422 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 QRFPRQ96P65 431 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 ZNF717Q9BY31 904 aaPredicted RBP20.09■□□□□ 0.81
VPS29-206ENST00000549578 ZNF304Q9HCX3 659 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 SLC22A11Q9NSA0 550 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 CDC14AQ9UNH5 594 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 CCL27Q9Y4X3 112 aa20.09■□□□□ 0.81
VPS29-206ENST00000549578 IQCJ-SCHIP1C9J366 451 aaPredicted RBP20.08■□□□□ 0.81
VPS29-206ENST00000549578 DNAJB6O75190 326 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 SEMA3DO95025 777 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 CERS1P27544 350 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 SSR2P43308 183 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 MAT1AQ00266 395 aaKnown RBP20.08■□□□□ 0.81
VPS29-206ENST00000549578 BTKQ06187 659 aa20.08■□□□□ 0.81
VPS29-206ENST00000549578 TBL3Q12788 808 aaKnown RBP20.08■□□□□ 0.81
VPS29-206ENST00000549578 SPDYAQ5MJ70 313 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms