RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 SNRNP200O75643 2136 aaKnown RBP8.8□□□□□ -1
YBX3-218ENST00000546298 UBR5O95071 2799 aaPredicted RBP8.79□□□□□ -1
YBX3-218ENST00000546298 TENM4Q6N022 2769 aa8.79□□□□□ -1
YBX3-218ENST00000546298 SETXQ7Z333 2677 aaKnown RBP8.79□□□□□ -1
YBX3-218ENST00000546298 POLEQ07864 2286 aa8.79□□□□□ -1
YBX3-218ENST00000546298 TCRBV9S1A1TA0A576 114 aa8.79□□□□□ -1
YBX3-218ENST00000546298 SYNDIG1LA6NDD5 238 aa8.79□□□□□ -1
YBX3-218ENST00000546298 ANKDD1BA6NHY2 528 aa8.79□□□□□ -1
YBX3-218ENST00000546298 NCF1BA6NI72 391 aaPredicted RBP8.79□□□□□ -1
YBX3-218ENST00000546298 FAM159BA6NKW6 160 aa8.79□□□□□ -1
YBX3-218ENST00000546298 GABRR3A8MPY1 467 aa8.79□□□□□ -1
YBX3-218ENST00000546298 NCF1CA8MVU1 366 aaPredicted RBP8.79□□□□□ -1
YBX3-218ENST00000546298 CLDN4O14493 209 aa8.79□□□□□ -1
YBX3-218ENST00000546298 RAD51CO43502 376 aa8.79□□□□□ -1
YBX3-218ENST00000546298 CLEC3AO75596 197 aa8.79□□□□□ -1
YBX3-218ENST00000546298 STK16O75716 305 aa8.79□□□□□ -1
YBX3-218ENST00000546298 CCDC166P0CW27 439 aa8.79□□□□□ -1
YBX3-218ENST00000546298 SMIM10L1P0DMW3 83 aa8.79□□□□□ -1
YBX3-218ENST00000546298 NCF1P14598 390 aaPredicted RBP8.79□□□□□ -1
YBX3-218ENST00000546298 EEF1DP29692 281 aaKnown RBP8.79□□□□□ -1
YBX3-218ENST00000546298 GGT5P36269 586 aa8.79□□□□□ -1
YBX3-218ENST00000546298 CD96P40200 585 aa8.79□□□□□ -1
YBX3-218ENST00000546298 GDF5P43026 501 aa8.79□□□□□ -1
YBX3-218ENST00000546298 TDGF1P3P51864 188 aa8.79□□□□□ -1
YBX3-218ENST00000546298 PLTPP55058 493 aa8.79□□□□□ -1
YBX3-218ENST00000546298 BTN3A2P78410 334 aa8.79□□□□□ -1
YBX3-218ENST00000546298 MRPS25P82663 173 aaKnown RBP8.79□□□□□ -1
YBX3-218ENST00000546298 OC90Q02509 493 aaPredicted RBP8.79□□□□□ -1
YBX3-218ENST00000546298 TGM3Q08188 693 aa8.79□□□□□ -1
YBX3-218ENST00000546298 TUBA3CQ13748 450 aa8.79□□□□□ -1
YBX3-218ENST00000546298 SLBPQ14493 270 aaKnown RBP eCLIP8.79□□□□□ -1
YBX3-218ENST00000546298 OR1C1Q15619 314 aa8.79□□□□□ -1
YBX3-218ENST00000546298 HIST2H2ACQ16777 129 aaPredicted RBP8.79□□□□□ -1
YBX3-218ENST00000546298 PAGE2BQ5JRK9 111 aa8.79□□□□□ -1
YBX3-218ENST00000546298 GRTP1Q5TC63 336 aa8.79□□□□□ -1
YBX3-218ENST00000546298 FCRLBQ6BAA4 426 aa8.79□□□□□ -1
YBX3-218ENST00000546298 HIST2H2AA3Q6FI13 130 aa8.79□□□□□ -1
YBX3-218ENST00000546298 MTFR2Q6P444 385 aa8.79□□□□□ -1
YBX3-218ENST00000546298 TUBA3EQ6PEY2 450 aa8.79□□□□□ -1
YBX3-218ENST00000546298 CTAGE3PQ8IX95 158 aa8.79□□□□□ -1
YBX3-218ENST00000546298 SLC34A3Q8N130 599 aa8.79□□□□□ -1
YBX3-218ENST00000546298 STAG3L4Q8TBR4 150 aa8.79□□□□□ -1
YBX3-218ENST00000546298 ELP5Q8TE02 316 aa8.79□□□□□ -1
YBX3-218ENST00000546298 CREB3L4Q8TEY5 395 aa8.79□□□□□ -1
YBX3-218ENST00000546298 SMIM10Q96HG1 83 aa8.79□□□□□ -1
YBX3-218ENST00000546298 GPR22Q99680 433 aa8.79□□□□□ -1
YBX3-218ENST00000546298 RBBP8Q99708 897 aa8.79□□□□□ -1
YBX3-218ENST00000546298 EFCAB11Q9BUY7 163 aa8.79□□□□□ -1
YBX3-218ENST00000546298 RHBGQ9H310 441 aa8.79□□□□□ -1
YBX3-218ENST00000546298 PRM3Q9NNZ6 103 aa8.79□□□□□ -1
YBX3-218ENST00000546298 SMYD2Q9NRG4 433 aa8.79□□□□□ -1
YBX3-218ENST00000546298 CD274Q9NZQ7 290 aa8.79□□□□□ -1
YBX3-218ENST00000546298 SUCOQ9UBS9 1254 aaKnown RBP8.79□□□□□ -1
YBX3-218ENST00000546298 SEC14L3Q9UDX4 400 aa8.79□□□□□ -1
YBX3-218ENST00000546298 MRPS33Q9Y291 106 aaKnown RBP8.79□□□□□ -1
YBX3-218ENST00000546298 SPTBN1Q01082 2364 aaKnown RBP8.79□□□□□ -1
YBX3-218ENST00000546298 SHANK1Q9Y566 2161 aa8.79□□□□□ -1
YBX3-218ENST00000546298 TRGV8A0A0C4DH27 118 aa8.78□□□□□ -1
YBX3-218ENST00000546298 TCRBV16S1A1N1A0A5B0 115 aa8.78□□□□□ -1
YBX3-218ENST00000546298 CXorf49A8MYA2 514 aaPredicted RBP8.78□□□□□ -1
YBX3-218ENST00000546298 FCHO1O14526 889 aa8.78□□□□□ -1
YBX3-218ENST00000546298 PHGDHO43175 533 aaKnown RBP8.78□□□□□ -1
YBX3-218ENST00000546298 ERI3O43414 337 aaKnown RBP8.78□□□□□ -1
YBX3-218ENST00000546298 B3GALT2O43825 422 aa8.78□□□□□ -1
YBX3-218ENST00000546298 DNAJB6O75190 326 aa8.78□□□□□ -1
YBX3-218ENST00000546298 UNC5CO95185 931 aa8.78□□□□□ -1
YBX3-218ENST00000546298 WISP3O95389 354 aaPredicted RBP8.78□□□□□ -1
YBX3-218ENST00000546298 CLDN1O95832 211 aa8.78□□□□□ -1
YBX3-218ENST00000546298 B3GALT4O96024 378 aa8.78□□□□□ -1
YBX3-218ENST00000546298 CD1DP15813 335 aa8.78□□□□□ -1
YBX3-218ENST00000546298 CRABP2P29373 138 aa8.78□□□□□ -1
YBX3-218ENST00000546298 STX2P32856 288 aa8.78□□□□□ -1
YBX3-218ENST00000546298 HSD17B7P56937 341 aa8.78□□□□□ -1
YBX3-218ENST00000546298 KCNK10P57789 538 aa8.78□□□□□ -1
YBX3-218ENST00000546298 RAB10P61026 200 aa8.78□□□□□ -1
YBX3-218ENST00000546298 ETF1P62495 437 aaKnown RBP8.78□□□□□ -1
YBX3-218ENST00000546298 BTG2P78543 158 aa8.78□□□□□ -1
YBX3-218ENST00000546298 ALDH6A1Q02252 535 aaKnown RBP8.78□□□□□ -1
YBX3-218ENST00000546298 C2orf54Q08AI8 447 aa8.78□□□□□ -1
YBX3-218ENST00000546298 HYAL2Q12891 473 aa8.78□□□□□ -1
YBX3-218ENST00000546298 NAB1Q13506 487 aa8.78□□□□□ -1
YBX3-218ENST00000546298 LAPTM5Q13571 262 aa8.78□□□□□ -1
YBX3-218ENST00000546298 TERF2Q15554 542 aa8.78□□□□□ -1
YBX3-218ENST00000546298 ZRSR2Q15696 482 aaKnown RBP8.78□□□□□ -1
YBX3-218ENST00000546298 PDK4Q16654 411 aa8.78□□□□□ -1
YBX3-218ENST00000546298 C18orf21Q32NC0 220 aaPredicted RBP8.78□□□□□ -1
YBX3-218ENST00000546298 KRTCAP3Q53RY4 240 aa8.78□□□□□ -1
YBX3-218ENST00000546298 XKR6Q5GH73 641 aa8.78□□□□□ -1
YBX3-218ENST00000546298 HIST2H2BCQ6DN03 193 aa8.78□□□□□ -1
YBX3-218ENST00000546298 SLC25A25Q6KCM7 469 aa8.78□□□□□ -1
YBX3-218ENST00000546298 TRIM40Q6P9F5 258 aa8.78□□□□□ -1
YBX3-218ENST00000546298 FJX1Q86VR8 437 aa8.78□□□□□ -1
YBX3-218ENST00000546298 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.78□□□□□ -1
YBX3-218ENST00000546298 SHISA5Q8N114 240 aa8.78□□□□□ -1
YBX3-218ENST00000546298 CA13Q8N1Q1 262 aa8.78□□□□□ -1
YBX3-218ENST00000546298 SPATA6LQ8N4H0 392 aa8.78□□□□□ -1
YBX3-218ENST00000546298 SNX31Q8N9S9 440 aa8.78□□□□□ -1
YBX3-218ENST00000546298 MDS2Q8NDY4 140 aa8.78□□□□□ -1
YBX3-218ENST00000546298 SRFBP1Q8NEF9 429 aaKnown RBP8.78□□□□□ -1
YBX3-218ENST00000546298 C7orf57Q8NEG2 295 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms