RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 CYP4X1Q8N118 509 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 KRT78Q8N1N4 520 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 TCAIMQ8N3R3 496 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 ADAMTS18Q8TE60 1221 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 THAP3Q8WTV1 239 aaPredicted RBP12.32□□□□□ -0.44
RTN3-213ENST00000543552 TMEM125Q96AQ2 219 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 PWWP2AQ96N64 755 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 WDR83Q9BRX9 315 aaKnown RBP12.32□□□□□ -0.44
RTN3-213ENST00000543552 TRIM31Q9BZY9 425 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 PITHD1Q9GZP4 211 aaPredicted RBP12.32□□□□□ -0.44
RTN3-213ENST00000543552 KCNF1Q9H3M0 494 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 MOCS1Q9NZB8 636 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 KLF2Q9Y5W3 355 aaPredicted RBP12.32□□□□□ -0.44
RTN3-213ENST00000543552 PSAT1Q9Y617 370 aa12.32□□□□□ -0.44
RTN3-213ENST00000543552 SAGE2PA6NJ88 616 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 E7ESA3 106 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 FAM227AF5H4B4 570 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 CCL21O00585 134 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 SLC19A2O60779 497 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 WDR47O94967 919 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 MST1P26927 711 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 HNF4AP41235 474 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 PGGT1BP53609 377 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 TAS2R39P59534 338 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 PMP22Q01453 160 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 POU4F1Q01851 419 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 RCN2Q14257 317 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 TERF2Q15554 542 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 TSNQ15631 228 aaKnown RBP12.31□□□□□ -0.44
RTN3-213ENST00000543552 TOR1AIP1Q5JTV8 583 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 TMIGD1Q6UXZ0 262 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 RPS19BP1Q86WX3 136 aaKnown RBP12.31□□□□□ -0.44
RTN3-213ENST00000543552 KLHDC8AQ8IYD2 350 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 ZNF808Q8N4W9 903 aaPredicted RBP12.31□□□□□ -0.44
RTN3-213ENST00000543552 ANKRD53Q8N9V6 530 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 ELP5Q8TE02 316 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 PYROXD1Q8WU10 500 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 GAL3ST3Q96A11 431 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 MARVELD3Q96A59 401 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 SCMH1Q96GD3 660 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 SIGLEC12Q96PQ1 595 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 NPLQ9BXD5 320 aaPredicted RBP12.31□□□□□ -0.44
RTN3-213ENST00000543552 DERL2Q9GZP9 239 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 KLHL1Q9NR64 748 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 ANKRD10Q9NXR5 420 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 GPRC5BQ9NZH0 403 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 LRFN1Q9P244 771 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 MRPS33Q9Y291 106 aaKnown RBP12.31□□□□□ -0.44
RTN3-213ENST00000543552 MMACHCQ9Y4U1 282 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 ABCA12Q86UK0 2595 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 CROCCQ5TZA2 2017 aa12.31□□□□□ -0.44
RTN3-213ENST00000543552 TCRBV16S1A1N1A0A5B0 115 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 ASPDHA6ND91 283 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 EIF3HO15372 352 aaKnown RBP eCLIP12.3□□□□□ -0.44
RTN3-213ENST00000543552 SLC25A12O75746 678 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 SP1P08047 785 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 C1GALT1C1LP0DN25 315 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 RPL21P46778 160 aaKnown RBP12.3□□□□□ -0.44
RTN3-213ENST00000543552 CYB561P49447 251 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 SMSP52788 366 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 TGM3Q08188 693 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 CBLBQ13191 982 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 ZNF460Q14592 562 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 FASTKD3Q14CZ7 662 aaKnown RBP12.3□□□□□ -0.44
RTN3-213ENST00000543552 CDKL4Q5MAI5 379 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 SPINK14Q6IE38 97 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 MAATS1Q7Z4T9 603 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 EID3Q8N140 333 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 RHBDF1Q96CC6 855 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 CCDC120Q96HB5 630 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 GPR137Q96N19 417 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 KRT12Q99456 494 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 DEFB126Q9BYW3 111 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 SPNS1Q9H2V7 528 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 RHBGQ9H310 441 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 EHD1Q9H4M9 534 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 CDCP1Q9H5V8 836 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 CHST11Q9NPF2 352 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 WWOXQ9NZC7 414 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 IKZF3Q9UKT9 509 aa12.3□□□□□ -0.44
RTN3-213ENST00000543552 CACNA1DQ01668 2161 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 IGKV3D-11A0A0A0MRZ8 115 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 ARHGAP10A1A4S6 786 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 FAM187AA6NFU0 413 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 ANKDD1BA6NHY2 528 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 USP27XA6NNY8 438 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 CLDN4O14493 209 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 CLGNO14967 610 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 B3GALT2O43825 422 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 NEURL1O76050 574 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 B3GALT4O96024 378 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 S100BP04271 92 aaPredicted RBP12.29□□□□□ -0.44
RTN3-213ENST00000543552 SMIM10L1P0DMW3 83 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 ESRRAP11474 423 aaPredicted RBP12.29□□□□□ -0.44
RTN3-213ENST00000543552 ZNF24P17028 368 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 MAOAP21397 527 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 TPP2P29144 1249 aaPredicted RBP12.29□□□□□ -0.44
RTN3-213ENST00000543552 TRHRP34981 398 aaPredicted RBP12.29□□□□□ -0.44
RTN3-213ENST00000543552 SLC6A12P48065 614 aa12.29□□□□□ -0.44
RTN3-213ENST00000543552 ATP6V0D1P61421 351 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms