RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 TICAM1Q8IUC6 712 aa12.32□□□□□ -0.44
RTN3-212ENST00000543123 ZBED8Q8IZ13 594 aa12.32□□□□□ -0.44
RTN3-212ENST00000543123 CYP4X1Q8N118 509 aa12.32□□□□□ -0.44
RTN3-212ENST00000543123 KRT78Q8N1N4 520 aa12.32□□□□□ -0.44
RTN3-212ENST00000543123 TCAIMQ8N3R3 496 aa12.32□□□□□ -0.44
RTN3-212ENST00000543123 ADAMTS18Q8TE60 1221 aa12.32□□□□□ -0.44
RTN3-212ENST00000543123 THAP3Q8WTV1 239 aaPredicted RBP12.32□□□□□ -0.44
RTN3-212ENST00000543123 TMEM125Q96AQ2 219 aa12.32□□□□□ -0.44
RTN3-212ENST00000543123 PWWP2AQ96N64 755 aa12.32□□□□□ -0.44
RTN3-212ENST00000543123 WDR83Q9BRX9 315 aaKnown RBP12.32□□□□□ -0.44
RTN3-212ENST00000543123 TRIM31Q9BZY9 425 aa12.32□□□□□ -0.44
RTN3-212ENST00000543123 PITHD1Q9GZP4 211 aaPredicted RBP12.32□□□□□ -0.44
RTN3-212ENST00000543123 KCNF1Q9H3M0 494 aa12.32□□□□□ -0.44
RTN3-212ENST00000543123 MOCS1Q9NZB8 636 aa12.32□□□□□ -0.44
RTN3-212ENST00000543123 KLF2Q9Y5W3 355 aaPredicted RBP12.32□□□□□ -0.44
RTN3-212ENST00000543123 PSAT1Q9Y617 370 aa12.32□□□□□ -0.44
RTN3-212ENST00000543123 SAGE2PA6NJ88 616 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 E7ESA3 106 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 FAM227AF5H4B4 570 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 CCL21O00585 134 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 SLC19A2O60779 497 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 WDR47O94967 919 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 MST1P26927 711 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 HNF4AP41235 474 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 PGGT1BP53609 377 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 TAS2R39P59534 338 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 PMP22Q01453 160 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 POU4F1Q01851 419 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 RCN2Q14257 317 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 TERF2Q15554 542 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 TSNQ15631 228 aaKnown RBP12.31□□□□□ -0.44
RTN3-212ENST00000543123 TOR1AIP1Q5JTV8 583 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 TMIGD1Q6UXZ0 262 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 RPS19BP1Q86WX3 136 aaKnown RBP12.31□□□□□ -0.44
RTN3-212ENST00000543123 KLHDC8AQ8IYD2 350 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 ZNF808Q8N4W9 903 aaPredicted RBP12.31□□□□□ -0.44
RTN3-212ENST00000543123 ANKRD53Q8N9V6 530 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 ELP5Q8TE02 316 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 PYROXD1Q8WU10 500 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 GAL3ST3Q96A11 431 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 MARVELD3Q96A59 401 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 SCMH1Q96GD3 660 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 SIGLEC12Q96PQ1 595 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 NPLQ9BXD5 320 aaPredicted RBP12.31□□□□□ -0.44
RTN3-212ENST00000543123 DERL2Q9GZP9 239 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 KLHL1Q9NR64 748 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 ANKRD10Q9NXR5 420 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 GPRC5BQ9NZH0 403 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 LRFN1Q9P244 771 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 MRPS33Q9Y291 106 aaKnown RBP12.31□□□□□ -0.44
RTN3-212ENST00000543123 MMACHCQ9Y4U1 282 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 ABCA12Q86UK0 2595 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 CROCCQ5TZA2 2017 aa12.31□□□□□ -0.44
RTN3-212ENST00000543123 TCRBV16S1A1N1A0A5B0 115 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 ASPDHA6ND91 283 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 EIF3HO15372 352 aaKnown RBP eCLIP12.3□□□□□ -0.44
RTN3-212ENST00000543123 SLC25A12O75746 678 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 SP1P08047 785 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 C1GALT1C1LP0DN25 315 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 RPL21P46778 160 aaKnown RBP12.3□□□□□ -0.44
RTN3-212ENST00000543123 CYB561P49447 251 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 SMSP52788 366 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 TGM3Q08188 693 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 CBLBQ13191 982 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 ZNF460Q14592 562 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 FASTKD3Q14CZ7 662 aaKnown RBP12.3□□□□□ -0.44
RTN3-212ENST00000543123 CDKL4Q5MAI5 379 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 SPINK14Q6IE38 97 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 MAATS1Q7Z4T9 603 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 EID3Q8N140 333 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 RHBDF1Q96CC6 855 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 CCDC120Q96HB5 630 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 GPR137Q96N19 417 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 KRT12Q99456 494 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 DEFB126Q9BYW3 111 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 SPNS1Q9H2V7 528 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 RHBGQ9H310 441 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 EHD1Q9H4M9 534 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 CDCP1Q9H5V8 836 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 CHST11Q9NPF2 352 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 WWOXQ9NZC7 414 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 IKZF3Q9UKT9 509 aa12.3□□□□□ -0.44
RTN3-212ENST00000543123 CACNA1DQ01668 2161 aa12.29□□□□□ -0.44
RTN3-212ENST00000543123 IGKV3D-11A0A0A0MRZ8 115 aa12.29□□□□□ -0.44
RTN3-212ENST00000543123 ARHGAP10A1A4S6 786 aa12.29□□□□□ -0.44
RTN3-212ENST00000543123 FAM187AA6NFU0 413 aa12.29□□□□□ -0.44
RTN3-212ENST00000543123 ANKDD1BA6NHY2 528 aa12.29□□□□□ -0.44
RTN3-212ENST00000543123 USP27XA6NNY8 438 aa12.29□□□□□ -0.44
RTN3-212ENST00000543123 CLDN4O14493 209 aa12.29□□□□□ -0.44
RTN3-212ENST00000543123 CLGNO14967 610 aa12.29□□□□□ -0.44
RTN3-212ENST00000543123 B3GALT2O43825 422 aa12.29□□□□□ -0.44
RTN3-212ENST00000543123 NEURL1O76050 574 aa12.29□□□□□ -0.44
RTN3-212ENST00000543123 B3GALT4O96024 378 aa12.29□□□□□ -0.44
RTN3-212ENST00000543123 S100BP04271 92 aaPredicted RBP12.29□□□□□ -0.44
RTN3-212ENST00000543123 SMIM10L1P0DMW3 83 aa12.29□□□□□ -0.44
RTN3-212ENST00000543123 ESRRAP11474 423 aaPredicted RBP12.29□□□□□ -0.44
RTN3-212ENST00000543123 ZNF24P17028 368 aa12.29□□□□□ -0.44
RTN3-212ENST00000543123 MAOAP21397 527 aa12.29□□□□□ -0.44
RTN3-212ENST00000543123 TPP2P29144 1249 aaPredicted RBP12.29□□□□□ -0.44
RTN3-212ENST00000543123 TRHRP34981 398 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms