RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 C7orf61Q8IZ16 206 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 TRAM1L1Q8N609 369 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 ARMC5Q96C12 935 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 HRASLS5Q96KN8 279 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 FZD4Q9ULV1 537 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 RBMX2Q9Y388 322 aaKnown RBP12.03□□□□□ -0.48
RNF4-222ENST00000541204 PRKAB1Q9Y478 270 aa12.03□□□□□ -0.48
RNF4-222ENST00000541204 TBX1O43435 398 aa12.02□□□□□ -0.48
RNF4-222ENST00000541204 MRPS14O60783 128 aaKnown RBP12.02□□□□□ -0.48
RNF4-222ENST00000541204 NTRK1P04629 796 aa12.02□□□□□ -0.48
RNF4-222ENST00000541204 DBTP11182 482 aaKnown RBP12.02□□□□□ -0.48
RNF4-222ENST00000541204 EN2P19622 333 aaPredicted RBP12.02□□□□□ -0.48
RNF4-222ENST00000541204 SERPINB1P30740 379 aa12.02□□□□□ -0.48
RNF4-222ENST00000541204 MMP12P39900 470 aa12.02□□□□□ -0.48
RNF4-222ENST00000541204 SLC19A1P41440 591 aa12.02□□□□□ -0.48
RNF4-222ENST00000541204 SELENBP1Q13228 472 aa12.02□□□□□ -0.48
RNF4-222ENST00000541204 CDKL4Q5MAI5 379 aa12.02□□□□□ -0.48
RNF4-222ENST00000541204 THOC6Q86W42 341 aaKnown RBP12.02□□□□□ -0.48
RNF4-222ENST00000541204 TRAPPC5Q8IUR0 188 aa12.02□□□□□ -0.48
RNF4-222ENST00000541204 SYNPOQ8N3V7 929 aa12.02□□□□□ -0.48
RNF4-222ENST00000541204 OR2AG1Q9H205 316 aa12.02□□□□□ -0.48
RNF4-222ENST00000541204 RNF167Q9H6Y7 350 aa12.02□□□□□ -0.48
RNF4-222ENST00000541204 TESMINQ9Y4I5 508 aa12.02□□□□□ -0.48
RNF4-222ENST00000541204 MMP20O60882 483 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 ATG13O75143 517 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 MPC1LP0DKB6 136 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 TNFRSF1BP20333 461 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 NUDT6P53370 316 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 CASP9P55211 416 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 KCNJ8Q15842 424 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 TIGD6Q17RP2 521 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 SOWAHCQ53LP3 525 aaPredicted RBP12.02□□□□□ -0.49
RNF4-222ENST00000541204 AGTRAPQ6RW13 159 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 NEK10Q6ZWH5 1172 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 DPPA4Q7L190 304 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 TECPR1Q7Z6L1 1165 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 FAM124AQ86V42 546 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 CFAP206Q8IYR0 622 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 TCAIMQ8N3R3 496 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 CELF5Q8N6W0 485 aaKnown RBP12.02□□□□□ -0.49
RNF4-222ENST00000541204 VN1R2Q8NFZ6 395 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 KLHL42Q9P2K6 505 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 TSC22D4Q9Y3Q8 395 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 PCDHB11Q9Y5F2 797 aa12.02□□□□□ -0.49
RNF4-222ENST00000541204 METTL15A6NJ78 407 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 SLC9A3R1O14745 358 aaPredicted RBP12.01□□□□□ -0.49
RNF4-222ENST00000541204 SUV39H1O43463 412 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 SLCO2B1O94956 709 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 CA3P07451 260 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 GSTT2P0CG29 244 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 GSTT2BP0CG30 244 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 JUPP14923 745 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 MAGP20916 626 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 GRK5P34947 590 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 HNRNPFP52597 415 aaKnown RBP12.01□□□□□ -0.49
RNF4-222ENST00000541204 DOC2AQ14183 400 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 STEAP3Q658P3 488 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 TTC23LQ6PF05 361 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 KIAA0907Q7Z7F0 614 aaPredicted RBP12.01□□□□□ -0.49
RNF4-222ENST00000541204 CCDC103Q8IW40 242 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 C2orf73Q8N5S3 287 aaPredicted RBP12.01□□□□□ -0.49
RNF4-222ENST00000541204 KIAA1958Q8N8K9 716 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 FAM83FQ8NEG4 500 aaPredicted RBP12.01□□□□□ -0.49
RNF4-222ENST00000541204 GPR156Q8NFN8 814 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 OR8J2Q8NGG1 315 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 SP7Q8TDD2 431 aaPredicted RBP12.01□□□□□ -0.49
RNF4-222ENST00000541204 FEVQ99581 238 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 EPYCQ99645 322 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 GABARAPL3Q9BY60 117 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 MIR1-1HGQ9H1L0 117 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 MMP27Q9H306 513 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 FAM120CQ9NX05 1096 aaKnown RBP12.01□□□□□ -0.49
RNF4-222ENST00000541204 VPS29Q9UBQ0 182 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 PSORS1C1Q9UIG5 152 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 LOC100506127A0A0U1RQW1 187 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 AGAP5A6NIR3 686 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 A8MU76 341 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 E9PQ18 207 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 NPIPB8E9PQR5 432 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 KPNA5O15131 536 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 OPN1SWP03999 348 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 CTSKP43235 329 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 AP1S2P56377 157 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 TUBA1BP68363 451 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 ELP6Q0PNE2 266 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 VEZF1Q14119 521 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 FAM78AQ5JUQ0 283 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.01□□□□□ -0.49
RNF4-222ENST00000541204 RAET1GQ6H3X3 334 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 TUBA1AQ71U36 451 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 ZNF557Q8N988 423 aaPredicted RBP12.01□□□□□ -0.49
RNF4-222ENST00000541204 POC5Q8NA72 575 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 OR52J3Q8NH60 311 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 SPPL2AQ8TCT8 520 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 FCRL1Q96LA6 429 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 OR4K3Q96R72 315 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 PKP4Q99569 1192 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 DUSP26Q9BV47 211 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 RAD18Q9NS91 495 aa12.01□□□□□ -0.49
RNF4-222ENST00000541204 RLIMQ9NVW2 624 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms