RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 PYCR2Q96C36 320 aa11.24□□□□□ -0.61
CBX3P4-202ENST00000540428 TREX2Q9BQ50 279 aaPredicted RBP11.24□□□□□ -0.61
CBX3P4-202ENST00000540428 SLC6A16Q9GZN6 736 aa11.24□□□□□ -0.61
CBX3P4-202ENST00000540428 PELI2Q9HAT8 420 aa11.24□□□□□ -0.61
CBX3P4-202ENST00000540428 PRDM9Q9NQV7 894 aa11.24□□□□□ -0.61
CBX3P4-202ENST00000540428 COQ3Q9NZJ6 369 aa11.24□□□□□ -0.61
CBX3P4-202ENST00000540428 CORO1CQ9ULV4 474 aaPredicted RBP11.24□□□□□ -0.61
CBX3P4-202ENST00000540428 CSMD2Q7Z408 3487 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 F8P00451 2351 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 KLRC4-KLRK1H3BQV0 150 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 PSMD12O00232 456 aaPredicted RBP11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 FANCGO15287 622 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 DNAJB6O75190 326 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 AHSGP02765 367 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 SERPIND1P05546 499 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 SMIM10L1P0DMW3 83 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 RNH1P13489 461 aaKnown RBP11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 CLCN2P51788 898 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 OLR1P78380 273 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 BTG2P78543 158 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 HSF1Q00613 529 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 REEP5Q00765 189 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 PDAP1Q13442 181 aaKnown RBP11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 TERF2Q15554 542 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 CATSPEREQ5SY80 951 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 RNASEH2BQ5TBB1 312 aaKnown RBP11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 NCCRP1Q6ZVX7 275 aaPredicted RBP11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 FGD2Q7Z6J4 655 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 CYP4X1Q8N118 509 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 C16orf52Q8NHV5 167 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 FAM57AQ8TBR7 257 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 NEIL2Q969S2 332 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 SDCCAG3Q96C92 435 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 PDLIM5Q96HC4 596 aaKnown RBP11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 SMIM10Q96HG1 83 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 DEFB126Q9BYW3 111 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 MCCC2Q9HCC0 563 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 PPT2Q9UMR5 302 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 PPIEQ9UNP9 301 aaKnown RBP11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 JRKLQ9Y4A0 524 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 MMACHCQ9Y4U1 282 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 PCNX1Q96RV3 2341 aa11.23□□□□□ -0.61
CBX3P4-202ENST00000540428 PGRMC1O00264 195 aaKnown RBP11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 TFECO14948 347 aaPredicted RBP11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 B3GALT4O96024 378 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 SERPINA6P08185 405 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 MAOAP21397 527 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 PTGER1P34995 402 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 PTGS2P35354 604 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 MEOX1P50221 254 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 TLE4Q04727 773 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 HYAL2Q12891 473 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 TESK1Q15569 626 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 BBS9Q3SYG4 887 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 HECTD2Q5U5R9 776 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 TMEM211Q6ICI0 200 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 FAM45BPQ6NSW5 357 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 SPNS3Q6ZMD2 512 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 SULF2Q8IWU5 870 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 ANKRD53Q8N9V6 530 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 APCDD1LQ8NCL9 501 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 B3GNT7Q8NFL0 401 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 FAM45AQ8TCE6 357 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 ANKRD7Q92527 254 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 CERS2Q96G23 380 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 MS4A14Q96JA4 679 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 AIF1LQ9BQI0 150 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 SPNS1Q9H2V7 528 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 NECTIN3Q9NQS3 549 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 PLSCR2Q9NRY7 297 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 ITGB1BP2Q9UKP3 347 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 VWA7Q9Y334 891 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 DYRK1BQ9Y463 629 aa11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 ANKRD17O75179 2603 aaKnown RBP11.22□□□□□ -0.61
CBX3P4-202ENST00000540428 SYNDIG1LA6NDD5 238 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 PEX1O43933 1283 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 GUCA1CO95843 209 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 TFEBP19484 476 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 KRTAP10-9P60411 292 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 RAB8AP61006 207 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 CDKL1Q00532 357 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 PPP1R3AQ16821 1122 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 NXPE4Q6UWF7 544 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 SBSNQ6UWP8 590 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 MEX3BQ6ZN04 569 aaKnown RBP11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 CDH24Q86UP0 819 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 LRRC8AQ8IWT6 810 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 GPALPP1Q8IXQ4 340 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 CYP4Z2PQ8N1L4 340 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 CA13Q8N1Q1 262 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 ZFP62Q8NB50 900 aaPredicted RBP11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 ACTRT1Q8TDG2 376 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 ASB5Q8WWX0 329 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 NPLQ9BXD5 320 aaPredicted RBP11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 ZFATQ9P243 1243 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 KCNE2Q9Y6J6 123 aa11.21□□□□□ -0.61
CBX3P4-202ENST00000540428 SCN3AQ9NY46 2000 aa11.21□□□□□ -0.62
CBX3P4-202ENST00000540428 TRBV11-1A0A0K0K1C0 115 aa11.2□□□□□ -0.62
CBX3P4-202ENST00000540428 GOLGA6L10A0A0M3HER8 536 aa11.2□□□□□ -0.62
CBX3P4-202ENST00000540428 A0A1B0GTH9 108 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms