RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 ALOX12P18054 663 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 CYLC1P35663 651 aaPredicted RBP10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 SKP1P63208 163 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 OLR1P78380 273 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 PLGLB1Q02325 96 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 SNTB1Q13884 538 aaKnown RBP10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 DEFB134Q4QY38 66 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 RTL6Q6ICC9 239 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 PEX26Q7Z412 305 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 PRUNE1Q86TP1 453 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 C17orf64Q86WR6 236 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 TC2NQ8N9U0 490 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 APCDD1LQ8NCL9 501 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 ZNF740Q8NDX6 193 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 WFDC11Q8NEX6 87 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 MFSD3Q96ES6 412 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 PWWP2AQ96N64 755 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 SLC30A3Q99726 388 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 SARGQ9BW04 601 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 CLK4Q9HAZ1 481 aaKnown RBP10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 DEPPQ9NTK1 212 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 CRIM1Q9NZV1 1036 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 KCMF1Q9P0J7 381 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 FBXW2Q9UKT8 454 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 ZNF148Q9UQR1 794 aa10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 YARS2Q9Y2Z4 477 aaKnown RBP10.83□□□□□ -0.68
CLSTN3-209ENST00000539982 IGKV3D-11A0A0A0MRZ8 115 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 TRBV11-1A0A0K0K1C0 115 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 A0A1B0GVC2 190 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 GRID2IPA4D2P6 1211 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 PINLYPA6NC86 204 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 A6NNC1 897 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 FAM166BA8MTA8 275 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 A8MUA0 341 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 GOLGA6L6A8MZA4 724 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 MIF4GDA9UHW6 222 aaKnown RBP10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 ACOT7O00154 380 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 SYT5O00445 386 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 IGHG3P01860 377 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 INHBBP09529 407 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 ENO3P13929 434 aaPredicted RBP10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 OGNP20774 298 aaKnown RBP10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 MAOAP21397 527 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 ADSLP30566 484 aaPredicted RBP10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 HOXC12P31275 282 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 ADH7P40394 386 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 SSR4P51571 173 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 TBPL1P62380 186 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 PWP1Q13610 501 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 CUL1Q13616 776 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 DEFB113Q30KQ7 82 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 TMEM198Q66K66 360 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 CES3Q6UWW8 571 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 PAMR1Q6UXH9 720 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 UBE2R2Q712K3 238 aaPredicted RBP10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 CENPUQ71F23 418 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 SLC22A16Q86VW1 577 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 GPALPP1Q8IXQ4 340 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 PSD4Q8NDX1 1056 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 ARMC2Q8NEN0 867 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 B3GNT7Q8NFL0 401 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 OR2M7Q8NG81 312 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 FAM222BQ8WU58 562 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 ARSGQ96EG1 525 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 SMC6Q96SB8 1091 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 MDFIQ99750 246 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 FRMD8P1Q9BZ68 369 aaPredicted RBP10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 NECTIN3Q9NQS3 549 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 PRDM9Q9NQV7 894 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 EIF2B3Q9NR50 452 aaKnown RBP10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 PAK5Q9P286 719 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 PACSIN2Q9UNF0 486 aaPredicted RBP10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 ERVK-11Q9UQG0 969 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 SH2B3Q9UQQ2 575 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 VPS9D1Q9Y2B5 631 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 JMJD1CQ15652 2540 aa10.82□□□□□ -0.68
CLSTN3-209ENST00000539982 FAM47E-STBD1D6RA91 191 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 WDR1O75083 606 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 GLSO94925 669 aaPredicted RBP10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 ATE1O95260 518 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 RAF1P04049 648 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 NPPBP16860 134 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 RPL22P35268 128 aaKnown RBP10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 DAZAP2Q15038 168 aaPredicted RBP10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 NDUFAF5Q5TEU4 345 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 CLEC9AQ6UXN8 241 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 TRILQ7L0X0 811 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 WDR53Q7Z5U6 358 aaPredicted RBP10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 CILP2Q8IUL8 1156 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 CCDC89Q8N998 374 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 SPC24Q8NBT2 197 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 GIMAP7Q8NHV1 300 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 TTTY12Q9BZ98 90 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 LACRTQ9GZZ8 138 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 INTS10Q9NVR2 710 aaKnown RBP10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 ZFATQ9P243 1243 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 B4GALT7Q9UBV7 327 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 ACAD8Q9UKU7 415 aa10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 PPIEQ9UNP9 301 aaKnown RBP10.81□□□□□ -0.68
CLSTN3-209ENST00000539982 MED16Q9Y2X0 877 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms