RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 ZIC1Q15915 447 aa20.23■□□□□ 0.83
VPS28-212ENST00000530836 PIGGQ5H8A4 983 aa20.23■□□□□ 0.83
VPS28-212ENST00000530836 SPANXN4Q5MJ08 99 aa20.23■□□□□ 0.83
VPS28-212ENST00000530836 R3HCC1LQ7Z5L2 792 aaKnown RBP20.23■□□□□ 0.83
VPS28-212ENST00000530836 GLRX5Q86SX6 157 aa20.23■□□□□ 0.83
VPS28-212ENST00000530836 ARL10Q8N8L6 244 aa20.23■□□□□ 0.83
VPS28-212ENST00000530836 CLPTM1LQ96KA5 538 aa20.23■□□□□ 0.83
VPS28-212ENST00000530836 ADA2Q9NZK5 511 aa20.23■□□□□ 0.83
VPS28-212ENST00000530836 ARHGAP10A1A4S6 786 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 DCDC2BA2VCK2 349 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 TBX6O95947 436 aaPredicted RBP20.22■□□□□ 0.83
VPS28-212ENST00000530836 HNRNPFP52597 415 aaKnown RBP20.22■□□□□ 0.83
VPS28-212ENST00000530836 MAZP56270 477 aaKnown RBP20.22■□□□□ 0.83
VPS28-212ENST00000530836 LRRC74AQ0VAA2 488 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 C14orf28Q4W4Y0 310 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 PAGE3Q5JUK9 113 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 SAMD4BQ5PRF9 694 aaKnown RBP20.22■□□□□ 0.83
VPS28-212ENST00000530836 CAMKMTQ7Z624 323 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 GPR180Q86V85 440 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 SFTPA2Q8IWL1 248 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 SLC35F3Q8IY50 421 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 OR8J2Q8NGG1 315 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 MTERF3Q96E29 417 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 EGLN2Q96KS0 407 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 OR52E6Q96RD3 313 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 SLC38A3Q99624 504 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 REXO4Q9GZR2 422 aaKnown RBP20.22■□□□□ 0.83
VPS28-212ENST00000530836 DENND2DQ9H6A0 471 aaPredicted RBP20.22■□□□□ 0.83
VPS28-212ENST00000530836 MYNNQ9NPC7 610 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 TMEM181Q9P2C4 612 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 BCAP29Q9UHQ4 241 aa20.22■□□□□ 0.83
VPS28-212ENST00000530836 LY6G6EA0A0G2JKS1 128 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 LRIT2A6NDA9 550 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 PLPP1O14494 284 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 CAPN5O15484 640 aaPredicted RBP20.21■□□□□ 0.83
VPS28-212ENST00000530836 NDUFS4O43181 175 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 UBXN7O94888 489 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 KCNH1O95259 989 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 KCNK5O95279 499 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 CKMT1AP12532 417 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 CKMT2P17540 419 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 DDX5P17844 614 aaKnown RBP20.21■□□□□ 0.83
VPS28-212ENST00000530836 ME2P23368 584 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 KIR3DL1P43629 444 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 TSFMP43897 325 aaKnown RBP20.21■□□□□ 0.83
VPS28-212ENST00000530836 NOVA1P51513 510 aaKnown RBP20.21■□□□□ 0.83
VPS28-212ENST00000530836 DGKQP52824 942 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 EPHA4P54764 986 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 STXBP1P61764 594 aaKnown RBP20.21■□□□□ 0.83
VPS28-212ENST00000530836 PWP1Q13610 501 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 ADPRMQ3LIE5 342 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 C1orf146Q5VVC0 180 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 FIGLAQ6QHK4 219 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 NUDT13Q86X67 352 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 PLD3Q8IV08 490 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 FAM20CQ8IXL6 584 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 TMEM132CQ8N3T6 1108 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.21■□□□□ 0.83
VPS28-212ENST00000530836 SLC45A3Q96JT2 553 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 F2RL3Q96RI0 385 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 ABCD2Q9UBJ2 740 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 U3KQA8 63 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 HEATR5BQ9P2D3 2071 aa20.21■□□□□ 0.83
VPS28-212ENST00000530836 SAP18O00422 153 aaKnown RBP20.2■□□□□ 0.82
VPS28-212ENST00000530836 SCAMP2O15127 329 aaKnown RBP20.2■□□□□ 0.82
VPS28-212ENST00000530836 PPM1DO15297 605 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 KLK1P06870 262 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 MYF5P13349 255 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 COX7A2P14406 83 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 MAGP20916 626 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 TRA2BP62995 288 aaKnown RBP20.2■□□□□ 0.82
VPS28-212ENST00000530836 TGM3Q08188 693 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 NR0B2Q15466 257 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 CCNYL2Q5T2Q4 361 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 SLC2A7Q6PXP3 512 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 DHDDSQ86SQ9 333 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 VPS37AQ8NEZ2 397 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 ITCHQ96J02 903 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 ATAD3AQ9NVI7 634 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 FAM120CQ9NX05 1096 aaKnown RBP20.2■□□□□ 0.82
VPS28-212ENST00000530836 POMT2Q9UKY4 750 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 FXYD1O00168 92 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 ERN1O75460 977 aaKnown RBP20.2■□□□□ 0.82
VPS28-212ENST00000530836 LRATO95237 230 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 BSGP35613 385 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 DUSP3P51452 185 aaPredicted RBP20.2■□□□□ 0.82
VPS28-212ENST00000530836 ACTR3P61158 418 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 RGS1Q08116 209 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 HKDC1Q2TB90 917 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 PGS1Q32NB8 556 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 HPS6Q86YV9 775 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 WDR48Q8TAF3 677 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 C16orf78Q8WTQ4 265 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 GTF2H4Q92759 462 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 SH3GL1Q99961 368 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 EPB41L1Q9H4G0 881 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 REEP4Q9H6H4 257 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 DDX31Q9H8H2 851 aaKnown RBP20.2■□□□□ 0.82
VPS28-212ENST00000530836 IL1RL2Q9HB29 575 aa20.2■□□□□ 0.82
VPS28-212ENST00000530836 EVA1BQ9NVM1 165 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms