RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PEBP1P30086 187 aaKnown RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 HMOX2P30519 316 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 SERPINB1P30740 379 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 AHRP35869 848 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 PIK3CBP42338 1070 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 SEC24CP53992 1094 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 CSNK1G2P78368 415 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 TSTA3Q13630 321 aaPredicted RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 SH2D4BQ5SQS7 431 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 PRAMEF9Q5VWM5 478 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 KANK2Q63ZY3 851 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 LETMD1Q6P1Q0 360 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 MED27Q6P2C8 311 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 GUSBP11Q6P575 273 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 FIGLAQ6QHK4 219 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 EPGNQ6UW88 154 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 TMIGD1Q6UXZ0 262 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 USP53Q70EK8 1073 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 SPRED1Q7Z699 444 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 KMT5CQ86Y97 462 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 GBP7Q8N8V2 638 aaPredicted RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 TTLQ8NG68 377 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 OR7G3Q8NG95 312 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 OR4D9Q8NGE8 314 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 BAHD1Q8TBE0 780 aaPredicted RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 WDR20Q8TBZ3 569 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 JPH3Q8WXH2 748 aaPredicted RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 ADAMTS14Q8WXS8 1223 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 TCTN2Q96GX1 697 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 METTL2AQ96IZ6 378 aaKnown RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 CNDP2Q96KP4 475 aaKnown RBP7.08□□□□□ -1.28
CD44-228ENST00000528455 CCT8L2Q96SF2 557 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 CCDC3Q9BQI4 270 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 PLCD4Q9BRC7 762 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 DPH7Q9BTV6 452 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 TRIM55Q9BYV6 548 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 ABCG4Q9H172 646 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 LRRN3Q9H3W5 708 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 BRF2Q9HAW0 419 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 ACSS2Q9NR19 701 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 NMRK1Q9NWW6 199 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 BTBD3Q9Y2F9 522 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 MSRB2Q9Y3D2 182 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 DNAJC15Q9Y5T4 150 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 AP1M2Q9Y6Q5 423 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 CACNA1BQ00975 2339 aa7.08□□□□□ -1.28
CD44-228ENST00000528455 IGKV1-8A0A0C4DH67 115 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 GSAPA4D1B5 854 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 OR2A25A4D2G3 310 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 TMEM8BA6NDV4 472 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 TLCD2A6NGC4 264 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 ANKDD1BA6NHY2 528 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 E7EQ34 232 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 NPIPB8E9PQR5 432 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 SLC28A1O00337 649 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 NTN3O00634 580 aaPredicted RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 LCMT2O60294 686 aaKnown RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 CRCPO75575 148 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 ZBTB11O95625 1053 aaPredicted RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 TGFB1P01137 390 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 MSL3P1P0C860 447 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 C1QTNF9P0C862 333 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 CDH1P12830 882 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 MYF5P13349 255 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 HSD3B1P14060 373 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 EZRP15311 586 aaKnown RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 CD22P20273 847 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 DRD4P21917 467 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 HSD3B2P26439 372 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 SERPINB3P29508 390 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 ARL1P40616 181 aaPredicted RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 CCR10P46092 362 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 CAPZBP47756 277 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 ARFIP1P53367 373 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 INHBCP55103 352 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 FOXA1P55317 472 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 RPS15AP62244 130 aaKnown RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 YBX1P67809 324 aaKnown RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 CCL7P80098 99 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 CFHR1Q03591 330 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 IFT88Q13099 833 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 ZRSR2Q15696 482 aaKnown RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 CPSF6Q16630 551 aaKnown RBP eCLIP7.07□□□□□ -1.28
CD44-228ENST00000528455 SMU1Q2TAY7 513 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 CYP27C1Q4G0S4 372 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 ZC3H12BQ5HYM0 836 aaKnown RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 CDCP2Q5VXM1 449 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 NKAIN2Q5VXU1 208 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 METTL21CQ5VZV1 264 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 FRG2Q64ET8 278 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 UNQ6494/PRO21346Q6UXR6 183 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 ZNF574Q6ZN55 896 aaPredicted RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 FAM47EQ6ZV65 393 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 PAQR7Q86WK9 346 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 ZNF761Q86XN6 746 aaPredicted RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 CDYL2Q8N8U2 506 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 Q8N9G6 341 aaPredicted RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 TRPV3Q8NET8 790 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 CEP70Q8NHQ1 597 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 IFI44Q8TCB0 444 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms