RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	TTC31	Q49AM3	519 aa	Predicted RBP	3.86	□□□□□ -1.79
CD44-223	ENST00000526553	TCTEX1D4	Q5JR98	221 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	SUSD4	Q5VX71	490 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	SPINK14	Q6IE38	97 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	ZNF343	Q6P1L6	599 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	GPRIN3	Q6ZVF9	776 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	CHMP1B	Q7LBR1	199 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	CCDC60	Q8IWA6	550 aa	Predicted RBP	3.86	□□□□□ -1.79
CD44-223	ENST00000526553	METTL4	Q8N3J2	472 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	SPEM1	Q8N4L4	309 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	ANKRD13C	Q8N6S4	541 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	AMER3	Q8N944	861 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	C11orf45	Q8TAV5	145 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	SLC26A7	Q8TE54	656 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	LRRC15	Q8TF66	581 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	CHURC1	Q8WUH1	139 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	UBLCP1	Q8WVY7	318 aa	Predicted RBP	3.86	□□□□□ -1.79
CD44-223	ENST00000526553	RIT1	Q92963	219 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	ST6GALNAC6	Q969X2	333 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	AK8	Q96MA6	479 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	EGLN3	Q9H6Z9	239 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	RAVER2	Q9HCJ3	691 aa	Known RBP	3.86	□□□□□ -1.79
CD44-223	ENST00000526553	IARS2	Q9NSE4	1012 aa	Known RBP	3.86	□□□□□ -1.79
CD44-223	ENST00000526553	COMMD8	Q9NX08	183 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	TRPC4	Q9UBN4	977 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	IL36A	Q9UHA7	158 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	LNPEP	Q9UIQ6	1025 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	CUX2	O14529	1486 aa		3.86	□□□□□ -1.79
CD44-223	ENST00000526553	C13orf42	A0A1B0GVH6	325 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553		A0A1W2PPR1	153 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	C17orf105	B2RV13	164 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	SLC1A7	O00341	560 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	SURF4	O15260	269 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	FLRT2	O43155	660 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	PPIP5K2	O43314	1243 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	CRCP	O75575	148 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	OLFM2	O95897	454 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	SLC16A8	O95907	504 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	GH1	P01241	217 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	UROS	P10746	265 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	CD59	P13987	128 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	EPOR	P19235	508 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	AADAC	P22760	399 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	IER3	P46695	156 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	CDX1	P47902	265 aa	Predicted RBP	3.85	□□□□□ -1.79
CD44-223	ENST00000526553	PAX8	Q06710	450 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	C17orf67	Q0P5P2	114 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	CBX3	Q13185	183 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	RPS6KA1	Q15418	735 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	RBBP7	Q16576	425 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	P2RY8	Q86VZ1	359 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	AMIGO1	Q86WK6	493 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	ZFAND4	Q86XD8	727 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553		Q8N377	158 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	LRTM2	Q8N967	370 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	UXS1	Q8NBZ7	420 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	OR4D10	Q8NGI6	311 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	MIPOL1	Q8TD10	442 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	SNX21	Q969T3	373 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	PGM2	Q96G03	612 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	EEF2KMT	Q96G04	330 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	SLC45A3	Q96JT2	553 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	GAL3ST4	Q96RP7	486 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	LGMN	Q99538	433 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	TRIM6	Q9C030	488 aa	Predicted RBP	3.85	□□□□□ -1.79
CD44-223	ENST00000526553	TBC1D13	Q9NVG8	400 aa		3.85	□□□□□ -1.79
CD44-223	ENST00000526553	SPAG9	O60271	1321 aa	Known RBP	3.85	□□□□□ -1.79
CD44-223	ENST00000526553	MTMR11	A4FU01	709 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	ASB14	A6NK59	587 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	KBTBD13	C9JR72	458 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553		K7EQD1	137 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	TFEC	O14948	347 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-223	ENST00000526553	SERPING1	P05155	500 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	ACADS	P16219	412 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	GATA2	P23769	480 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-223	ENST00000526553	PDHA2	P29803	388 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	CCND3	P30281	292 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-223	ENST00000526553	ALDH1B1	P30837	517 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	SFTPD	P35247	375 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	KCNJ1	P48048	391 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	OR1D5	P58170	312 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	NPRL3	Q12980	569 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	CNST	Q6PJW8	725 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	TMEM270	Q6UE05	265 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	PRSS55	Q6UWB4	352 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-223	ENST00000526553	LCLAT1	Q6UWP7	414 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	NHLRC1	Q6VVB1	395 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	GDPGP1	Q6ZNW5	385 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	KCTD9	Q7L273	389 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	ANKRD33	Q7Z3H0	272 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	CPEB2	Q7Z5Q1	589 aa	Known RBP	3.84	□□□□□ -1.79
CD44-223	ENST00000526553	GBP7	Q8N8V2	638 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-223	ENST00000526553	LPCAT1	Q8NF37	534 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	NCOA7	Q8NI08	942 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	P2RX5	Q93086	422 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	PYCR2	Q96C36	320 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	CNRIP1	Q96F85	164 aa	Predicted RBP	3.84	□□□□□ -1.79
CD44-223	ENST00000526553	ATXN7L3B	Q96GX2	97 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	FOXN4	Q96NZ1	517 aa		3.84	□□□□□ -1.79
CD44-223	ENST00000526553	NDN	Q99608	321 aa		3.84	□□□□□ -1.79

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