RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 KLHL31Q9H511 634 aa12.85□□□□□ -0.35
TCOF1-215ENST00000515516 DNAJC11Q9NVH1 559 aa12.85□□□□□ -0.35
TCOF1-215ENST00000515516 CD274Q9NZQ7 290 aa12.85□□□□□ -0.35
TCOF1-215ENST00000515516 DOPEY2Q9Y3R5 2298 aa12.85□□□□□ -0.35
TCOF1-215ENST00000515516 RP1L1Q8IWN7 2480 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-215ENST00000515516 ANKRD12Q6UB98 2062 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 ANKDD1BA6NHY2 528 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 FAM159BA6NKW6 160 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 PHGDHO43175 533 aaKnown RBP12.84□□□□□ -0.35
TCOF1-215ENST00000515516 STK16O75716 305 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 CD46P15529 392 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 STX2P32856 288 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 SLC6A12P48065 614 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 SLC26A5P58743 744 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 RAB10P61026 200 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 OC90Q02509 493 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-215ENST00000515516 HIST2H2ACQ16777 129 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-215ENST00000515516 C18orf21Q32NC0 220 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-215ENST00000515516 HIST2H2BCQ6DN03 193 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 HIST2H2AA3Q6FI13 130 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 SLCO4C1Q6ZQN7 724 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 QSOX2Q6ZRP7 698 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 CRLF3Q8IUI8 442 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 KLHDC8AQ8IYD2 350 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 PPM1NQ8N819 430 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 CREB3L4Q8TEY5 395 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 SEC16BQ96JE7 1060 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 TAAR6Q96RI8 345 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 MCMBPQ9BTE3 642 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 PHACTR1Q9C0D0 580 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 NT5DC2Q9H857 520 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 PRDM9Q9NQV7 894 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 GRHL1Q9NZI5 618 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 RNF112Q9ULX5 631 aa12.84□□□□□ -0.35
TCOF1-215ENST00000515516 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.84□□□□□ -0.35
TCOF1-215ENST00000515516 CLDN4O14493 209 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 B3GALT2O43825 422 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 DNAJB6O75190 326 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 MLYCDO95822 493 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 SMIM10L1P0DMW3 83 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 CD1DP15813 335 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 CRABP2P29373 138 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 GGT5P36269 586 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 MAGEA4P43358 317 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 HSPA7P48741 367 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 BTG2P78543 158 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 RBPJQ06330 500 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 CKAP4Q07065 602 aaKnown RBP12.83□□□□□ -0.36
TCOF1-215ENST00000515516 TGM3Q08188 693 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 HYAL2Q12891 473 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 LAPTM5Q13571 262 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 TUBA3CQ13748 450 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 SLMAPQ14BN4 828 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 OR1C1Q15619 314 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 XKR6Q5GH73 641 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 PAGE2BQ5JRK9 111 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 ZNF324BQ6AW86 544 aaPredicted RBP12.83□□□□□ -0.36
TCOF1-215ENST00000515516 TUBA3EQ6PEY2 450 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 TBC1D1Q86TI0 1168 aaPredicted RBP12.83□□□□□ -0.36
TCOF1-215ENST00000515516 RPS19BP1Q86WX3 136 aaKnown RBP12.83□□□□□ -0.36
TCOF1-215ENST00000515516 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.83□□□□□ -0.362e-7■■■■■ 102.3
TCOF1-215ENST00000515516 CA13Q8N1Q1 262 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 AMER2Q8N7J2 671 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 FAM98AQ8NCA5 519 aaKnown RBP12.83□□□□□ -0.36
TCOF1-215ENST00000515516 STAG3L4Q8TBR4 150 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 GAL3ST3Q96A11 431 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 SMIM10Q96HG1 83 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 NPLQ9BXD5 320 aaPredicted RBP12.83□□□□□ -0.36
TCOF1-215ENST00000515516 EHD1Q9H4M9 534 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 CDCP1Q9H5V8 836 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 ANKRD10Q9NXR5 420 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 SEC14L3Q9UDX4 400 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 MRPS33Q9Y291 106 aaKnown RBP12.83□□□□□ -0.36
TCOF1-215ENST00000515516 SHANK1Q9Y566 2161 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 PCM1Q15154 2024 aa12.83□□□□□ -0.36
TCOF1-215ENST00000515516 CTAGE15A4D2H0 777 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 LRIT2A6NDA9 550 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 GABRR3A8MPY1 467 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 FAM227AF5H4B4 570 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 CDK2AP1O14519 115 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 TAPBPO15533 448 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 ERI3O43414 337 aaKnown RBP12.82□□□□□ -0.36
TCOF1-215ENST00000515516 CCNT2O60583 730 aaKnown RBP12.82□□□□□ -0.36
TCOF1-215ENST00000515516 CLEC3AO75596 197 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 UNC5CO95185 931 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 STSP08842 583 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 MAOAP21397 527 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 EEF1DP29692 281 aaKnown RBP12.82□□□□□ -0.36
TCOF1-215ENST00000515516 CD96P40200 585 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 CASP6P55212 293 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 KCNK10P57789 538 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 GPX6P59796 221 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 NAB1Q13506 487 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 RCN2Q14257 317 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 OR4D1Q15615 310 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 PDK4Q16654 411 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 KBTBD12Q3ZCT8 623 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 TRIM40Q6P9F5 258 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 CTAGE6Q86UF2 777 aa12.82□□□□□ -0.36
TCOF1-215ENST00000515516 LGI4Q8N135 537 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms