RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 RBBP7Q16576 425 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 AP5B1Q2VPB7 878 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 C9orf152Q5JTZ5 239 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 CYB5R2Q6BCY4 276 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 CIR1Q86X95 450 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 C10orf111Q8N326 155 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 DPP10Q8N608 796 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 RNF139Q8WU17 664 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 CREB3L1Q96BA8 519 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 ULK4Q96C45 1275 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 CCDC115Q96NT0 180 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 SLC38A2Q96QD8 506 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 SPHK1Q9NYA1 384 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 PLEKHB1Q9UF11 243 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 NDRG3Q9UGV2 375 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 CLEC2DQ9UHP7 191 aa11.61□□□□□ -0.55
LIMCH1-213ENST00000511496 SUPT3HB4E1H0 165 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 QSOX1O00391 747 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 DGAT1O75907 488 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 PVALBP20472 110 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 LCN1P31025 176 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 VLDLRP98155 873 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 GOLGA7BQ2TAP0 167 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 FAM74A1Q5RGS3 127 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 HAGHLQ6PII5 290 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 C11orf96Q7Z7L8 435 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 GPR149Q86SP6 731 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 ADGRF3Q8IZF5 1079 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 OR8J3Q8NGG0 315 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 KHSRPQ92945 711 aaKnown RBP eCLIP11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 EXOSC8Q96B26 276 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 MS4A3Q96HJ5 214 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 ZIC5Q96T25 663 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 RAD9AQ99638 391 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 TMEM43Q9BTV4 400 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 PDCD10Q9BUL8 212 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 ZIM2Q9NZV7 527 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 MPP6Q9NZW5 540 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 TRPS1Q9UHF7 1281 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 HCN2Q9UL51 889 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 EFCAB7A8K855 629 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 URODP06132 367 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 LCP1P13796 627 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 ITGB8P26012 769 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 AVPR1BP47901 424 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 DSC2Q02487 901 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 TMEM107Q6UX40 140 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 CATSPERGQ6ZRH7 1159 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 GPR65Q8IYL9 337 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 LIX1Q8N485 282 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 OR1M1Q8NGA1 313 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 SLC25A46Q96AG3 418 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 CDK15Q96Q40 435 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 MNTQ99583 582 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 SPSB2Q99619 263 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 H2AFJQ9BTM1 129 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 POLR2J2Q9GZM3 115 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 C14orf105Q9NVL8 296 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 POLR3HQ9Y535 204 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 TRIP11Q15643 1979 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 A0A1B0GV90 55 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 SELENOFO60613 162 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 CD63P08962 238 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 ALPIP09923 528 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 SPP1P10451 314 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 VIPR1P32241 457 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 CRYBB2P43320 205 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 GPR176Q14439 515 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 GRIN2CQ14957 1233 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 FAM174BQ3ZCQ3 159 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 SLC25A25Q6KCM7 469 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 MIB1Q86YT6 1006 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 SYT14Q8NB59 555 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 PTDSS2Q9BVG9 487 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 SPRTNQ9H040 489 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 DNTTIP1Q9H147 329 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 ABCG5Q9H222 651 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 ASH2LQ9UBL3 628 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 GJA3Q9Y6H8 435 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 CHD5Q8TDI0 1954 aa11.6□□□□□ -0.55
LIMCH1-213ENST00000511496 DOT1LQ8TEK3 1739 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 ANXA2P2A6NMY6 339 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 RASGRP1O95267 797 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 ALDOBP05062 364 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 GGT2P36268 569 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 CDKN2DP55273 166 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 EEF1A1P68104 462 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 TNFRSF17Q02223 184 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 EEF1A2Q05639 463 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 EEF1A1P5Q5VTE0 462 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 OTUD1Q5VV17 481 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 KCTD11Q693B1 232 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 C7orf31Q8N865 590 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 PPHLN1Q8NEY8 458 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 OR4F6Q8NGB9 312 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 OR52J3Q8NH60 311 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 EDARADDQ8WWZ3 215 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 ELMOD3Q96FG2 381 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 TPD52L3Q96J77 140 aa11.59□□□□□ -0.55
LIMCH1-213ENST00000511496 PITX2Q99697 317 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms