RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 TRIM71Q2Q1W2 868 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 CRTC2Q53ET0 693 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 CXorf57Q6NSI4 855 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 JAZF1Q86VZ6 243 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 PARGQ86W56 976 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 TMEM25Q86YD3 366 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 BBS10Q8TAM1 723 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 NETO1Q8TDF5 533 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 TMEM80Q96HE8 168 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 YIPF4Q9BSR8 244 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 TRMT61BQ9BVS5 477 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 SNTG1Q9NSN8 517 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 MARCH5Q9NX47 278 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 LYARQ9NX58 379 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 STOX2Q9P2F5 926 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 PHF11Q9UIL8 331 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 SLC1A7O00341 560 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 TBX1O43435 398 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 GDI1P31150 447 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 APLP1P51693 650 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 FAM189BP81408 668 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 TSTQ16762 297 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 TPRG1LQ5T0D9 272 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 BORAQ6PGQ7 559 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 PLET1Q6UQ28 207 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 XKR5Q6UX68 686 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 ZNF367Q7RTV3 350 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 ADGRD2Q7Z7M1 963 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 ADGRG2Q8IZP9 1017 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 KLHL36Q8N4N3 616 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 CHST14Q8NCH0 376 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 GPR78Q96P69 363 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 IL23AQ9NPF7 189 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 AKAP7Q9P0M2 348 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 FBXL21Q9UKT6 434 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 PRKAB1Q9Y478 270 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 PRSS21Q9Y6M0 314 aa10.37□□□□□ -0.75
LIMCH1-205ENST00000503057 E7EQ34 232 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 XPNPEP2O43895 674 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 CACNG3O60359 315 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 MAGP20916 626 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 RPP38P78345 283 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 ZNF404Q494X3 552 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 RUNDC3AQ59EK9 446 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 NIPAL1Q6NVV3 410 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 ENPP7Q6UWV6 458 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 CAMKVQ8NCB2 501 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 OR4C6Q8NH72 309 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 NCSTNQ92542 709 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 FAM129BQ96TA1 746 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 CLMPQ9H6B4 373 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 MRPS7Q9Y2R9 242 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 A0A0U1RQS6 177 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 OR1E2P47887 323 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 BTN3A2P78410 334 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 MXD1Q05195 221 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 ST3GAL3Q11203 375 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 NPRL3Q12980 569 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 PMS2P3Q13401 168 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 SLC36A3Q495N2 470 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 C11orf88Q6PI97 169 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 IKBIPQ70UQ0 350 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 SERPINA11Q86U17 422 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 ALDH16A1Q8IZ83 802 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 PROKR1Q8TCW9 393 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 METTL2AQ96IZ6 378 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 KCTD7Q96MP8 289 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 DPH2Q9BQC3 489 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 INPP5KQ9BT40 448 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 ANKRA2Q9H9E1 313 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 DCAF13Q9NV06 445 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 ERVK-18Q9QC07 812 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 BTNL2Q9UIR0 455 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 TAF4O00268 1085 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 ACTR1BP42025 376 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 ACTR1AP61163 376 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 VBP1P61758 197 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 NDUFA5Q16718 116 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 EXOC3L2Q2M3D2 409 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 MFSD6LQ8IWD5 586 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 CADM2Q8N3J6 435 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 LRRC17Q8N6Y2 441 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 RBM18Q96H35 190 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 BCL7BQ9BQE9 202 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 FBXL12Q9NXK8 326 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 VAPAQ9P0L0 249 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 PCDHA9Q9Y5H5 950 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 SPIN1Q9Y657 262 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 GMEB1Q9Y692 573 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 KIAA1217Q5T5P2 1943 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 RBBP6Q7Z6E9 1792 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 CHURC1-FNTBB4DL54 471 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 FAAHO00519 579 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 TFECO14948 347 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 OR5F1O95221 314 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 CSTF2P33240 577 aaKnown RBP eCLIP10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 TMEM102Q8N9M5 508 aaPredicted RBP10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 ZNF563Q8TA94 476 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 FAM110BQ8TC76 370 aa10.36□□□□□ -0.75
LIMCH1-205ENST00000503057 GPR151Q8TDV0 419 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms