RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 H0YIV9 168 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 AGPSO00116 658 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SOCS6O14544 535 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PLIN3O60664 434 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ERLIN1O75477 346 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CLDN9O95484 217 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 HEXBP07686 556 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MYL2P10916 166 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ZNF10P21506 573 aaPredicted RBP15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 IL10P22301 178 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PRKAA2P54646 552 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 EMP2P54851 167 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 OLR1P78380 273 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 BTN3A2P78410 334 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PHEXP78562 749 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CHAF1BQ13112 559 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TRAF3Q13114 568 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 KCNAB2Q13303 367 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CPSF6Q16630 551 aaKnown RBP eCLIP15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 KRT71Q3SY84 523 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SOWAHCQ53LP3 525 aaPredicted RBP15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TRIM40Q6P9F5 258 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ZYG11AQ6WRX3 759 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SRRM1Q8IYB3 904 aaKnown RBP15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TMEM102Q8N9M5 508 aaPredicted RBP15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 OR2L5Q8NG80 312 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SLC39A7Q92504 469 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PEX11GQ96HA9 241 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 APOPT1Q96IL0 206 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 VPS50Q96JG6 964 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 FAR2Q96K12 515 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 FER1L6-AS2Q96M78 137 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CDK15Q96Q40 435 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 OR1F2PQ96R84 312 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MS4A8Q9BY19 250 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CLK4Q9HAZ1 481 aaKnown RBP15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TUBD1Q9UJT1 453 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MKL2Q9ULH7 1088 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 RNF11Q9Y3C5 154 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TSC22D4Q9Y3Q8 395 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 HS3ST3B1Q9Y662 390 aa15.39■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CCDC88CQ9P219 2028 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 A0A0G2JN53 185 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 G3V2L1 256 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CHST10O43529 356 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 JRKO75564 520 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 DNAJB5O75953 348 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SUPT7LO94864 414 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 OTCP00480 354 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CYC1P08574 325 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SFTPCP11686 197 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 IMPDH1P20839 514 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PIK3CBP42338 1070 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PLA2G16P53816 162 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CDH13P55290 713 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CLCQ05315 142 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TGM3Q08188 693 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ZNF844Q08AG5 666 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 DDX39BQ13838 428 aaKnown RBP15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MINDY4Q4G0A6 757 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 GGTA1PQ4G0N0 100 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 UNC50Q53HI1 259 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MFSD4BQ5TF39 518 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MILR1Q7Z6M3 343 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 SHISA5Q8N114 240 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CCDC63Q8NA47 563 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 HUS1BQ8NHY5 278 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 RDH11Q8TC12 318 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PPP4R1Q8TF05 950 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CCDC126Q96EE4 140 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 L3HYPDHQ96EM0 354 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CMTM7Q96FZ5 175 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MAGEB10Q96LZ2 347 aaPredicted RBP15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 F2RL3Q96RI0 385 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 RBCK1Q9BYM8 510 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TRIM55Q9BYV6 548 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 VN1R1Q9GZP7 353 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 IQCGQ9H095 443 aaKnown RBP15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 DMRT3Q9NQL9 472 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 FBXL4Q9UKA2 621 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 LOC400499M0QZD8 3231 aa15.38■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MGAQ8IWI9 3026 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CCDC151A5D8V7 595 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 MKRN2OSH3BPM6 223 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 PCDH17O14917 1159 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 DNAJB6O75190 326 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TGFB1P01137 390 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ACPPP15309 386 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TSPAN8P19075 237 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ZRSR2Q15696 482 aaKnown RBP15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TUBB8Q3ZCM7 444 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 TMEM35AQ53FP2 167 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 FAAH2Q6GMR7 532 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 ABHD17CQ6PCB6 329 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 KIRREL2Q6UWL6 708 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CHSY3Q70JA7 882 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CA13Q8N1Q1 262 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 RNF175Q8N4F7 328 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 BANPQ8N9N5 519 aa15.37■□□□□ 0.05
MSH5-SAPCD1-206ENST00000491552 CLEC1AQ8NC01 280 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms