RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 MFSD9Q8NBP5 474 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 STAG3L4Q8TBR4 150 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 NT5CQ8TCD5 201 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 KCTD4Q8WVF5 259 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 APOBEC4Q8WW27 367 aaKnown RBP5.42□□□□□ -1.54
CUX1-208ENST00000485792 SLC5A11Q8WWX8 675 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 MR1Q95460 341 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 NXNL1Q96CM4 212 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 CLIP3Q96DZ5 547 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 HIST1H2AHQ96KK5 128 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 HIST1H2AJQ99878 128 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 H2AFJQ9BTM1 129 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 NDC1Q9BTX1 674 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 C1QTNF3Q9BXJ4 246 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 TRIM54Q9BYV2 358 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 RHBGQ9H310 441 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 C12orf65Q9H3J6 166 aaKnown RBP5.42□□□□□ -1.54
CUX1-208ENST00000485792 CLK4Q9HAZ1 481 aaKnown RBP5.42□□□□□ -1.54
CUX1-208ENST00000485792 NMRAL1Q9HBL8 299 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 ZBTB20Q9HC78 741 aaPredicted RBP5.42□□□□□ -1.54
CUX1-208ENST00000485792 ZNF304Q9HCX3 659 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 UTP6Q9NYH9 597 aaKnown RBP5.42□□□□□ -1.54
CUX1-208ENST00000485792 GPRC5BQ9NZH0 403 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 MTRF1LQ9UGC7 380 aaKnown RBP5.42□□□□□ -1.54
CUX1-208ENST00000485792 ZFP69BQ9UJL9 534 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 EMCNQ9ULC0 261 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 ZNF490Q9ULM2 529 aaPredicted RBP5.42□□□□□ -1.54
CUX1-208ENST00000485792 PPT2Q9UMR5 302 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 NFU1Q9UMS0 254 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 POLHQ9Y253 713 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 SLC22A14Q9Y267 594 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 ACOT9Q9Y305 439 aa5.42□□□□□ -1.54
CUX1-208ENST00000485792 A0A087X1B8 175 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 B8ZZF3 427 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 PPP6CO00743 305 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 RIPK2O43353 540 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 SUV39H1O43463 412 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 WISP2O76076 250 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 IPO13O94829 963 aaKnown RBP5.41□□□□□ -1.54
CUX1-208ENST00000485792 KLHL18O94889 574 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 BMP10O95393 424 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 SERPINA6P08185 405 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 LTA4HP09960 611 aaKnown RBP5.41□□□□□ -1.54
CUX1-208ENST00000485792 ZGLP1P0C6A0 271 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 RNF224P0DH78 156 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 C1GALT1C1LP0DN25 315 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 PIM1P11309 404 aaPredicted RBP5.41□□□□□ -1.54
CUX1-208ENST00000485792 CDH1P12830 882 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 GNAZP19086 355 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 AGXTP21549 392 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 GSTM2P28161 218 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 PHBP35232 272 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 CCR10P46092 362 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 PPM1FP49593 454 aaPredicted RBP5.41□□□□□ -1.54
CUX1-208ENST00000485792 SERPINB9P50453 376 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 CCR8P51685 355 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 HNRNPFP52597 415 aaKnown RBP5.41□□□□□ -1.54
CUX1-208ENST00000485792 MAT1AQ00266 395 aaKnown RBP5.41□□□□□ -1.54
CUX1-208ENST00000485792 SRSF1Q07955 248 aaKnown RBP eCLIP5.41□□□□□ -1.54
CUX1-208ENST00000485792 ERV3-1Q14264 604 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 PCBP2Q15366 365 aaKnown RBP eCLIP5.41□□□□□ -1.54
CUX1-208ENST00000485792 PRR30Q53SZ7 412 aaPredicted RBP5.41□□□□□ -1.54
CUX1-208ENST00000485792 TECRLQ5HYJ1 363 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 CRB2Q5IJ48 1285 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 MROH9Q5TGP6 573 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 WDR93Q6P2C0 686 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 NXPE4Q6UWF7 544 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 KIRREL2Q6UWL6 708 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 IGFL3Q6UXB1 125 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 SHISA6Q6ZSJ9 500 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 LCA5Q86VQ0 697 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 CCDC25Q86WR0 208 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 TDRPQ86YL5 185 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 GPSM1Q86YR5 675 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 ZC3H7AQ8IWR0 971 aaKnown RBP5.41□□□□□ -1.54
CUX1-208ENST00000485792 LAS2Q8IYD9 372 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 CSNK1A1LQ8N752 337 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 KCT2Q8NC54 265 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 CAMKVQ8NCB2 501 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 TMEM52Q8NDY8 209 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 PLPP5Q8NEB5 264 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 OR5T3Q8NGG3 340 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 STT3BQ8TCJ2 826 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 IFT81Q8WYA0 676 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 PSMF1Q92530 271 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 TRIM44Q96DX7 344 aaPredicted RBP5.41□□□□□ -1.54
CUX1-208ENST00000485792 IMMP1LQ96LU5 166 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 TSNARE1Q96NA8 513 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 QRFPRQ96P65 431 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 PAFAH2Q99487 392 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 SMAD5Q99717 465 aaKnown RBP5.41□□□□□ -1.54
CUX1-208ENST00000485792 CAPS2Q9BXY5 557 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 ZNF717Q9BY31 904 aaPredicted RBP5.41□□□□□ -1.54
CUX1-208ENST00000485792 CD244Q9BZW8 370 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 SLC25A18Q9H1K4 315 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 LIN7BQ9HAP6 207 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 TNFRSF12AQ9NP84 129 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 SNX15Q9NRS6 342 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 LANCL2Q9NS86 450 aa5.41□□□□□ -1.54
CUX1-208ENST00000485792 SEMA3GQ9NS98 782 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms