RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 NME2P1O60361 137 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 CSDE1O75534 798 aaKnown RBP3.88□□□□□ -1.79
VPS13D-207ENST00000476169 PIGNO95427 931 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 SERPINA3P01011 423 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 IL1BP01584 269 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 GSTA2P09210 222 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 TMEM191BP0C7N4 346 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 CEBPBP17676 345 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 ITGB6P18564 788 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 S1PR1P21453 382 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 PAX7P23759 505 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 GNL1P36915 607 aaPredicted RBP3.88□□□□□ -1.79
VPS13D-207ENST00000476169 SLC1A3P43003 542 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 AMTP48728 403 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 CCL11P51671 97 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 VAMP7P51809 220 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 AIF1P55008 147 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 CLDN15P56746 228 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 NLRP11P59045 1033 aaKnown RBP3.88□□□□□ -1.79
VPS13D-207ENST00000476169 ACTR3P61158 418 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 RPP38P78345 283 aaKnown RBP3.88□□□□□ -1.79
VPS13D-207ENST00000476169 SSBP2P81877 361 aaPredicted RBP3.88□□□□□ -1.79
VPS13D-207ENST00000476169 KLC1Q07866 573 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 NME3Q13232 169 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 ADPRMQ3LIE5 342 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 CFAP221Q4G0U5 840 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 GPAT3Q53EU6 434 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 RAB6CQ53S08 254 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 TPGS2Q68CL5 300 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 KLHL10Q6JEL2 608 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 C16orf87Q6PH81 154 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 BLOC1S2Q6QNY1 142 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 CCNI2Q6ZMN8 369 aaPredicted RBP3.88□□□□□ -1.79
VPS13D-207ENST00000476169 GPR141Q7Z602 305 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 NBPF5PQ86XG9 351 aaPredicted RBP3.88□□□□□ -1.79
VPS13D-207ENST00000476169 GRAMD2AQ8IUY3 354 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 TMEM139Q8IV31 216 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 GCNT2Q8N0V5 402 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 ZNF444Q8N0Y2 327 aaPredicted RBP3.88□□□□□ -1.79
VPS13D-207ENST00000476169 CRYBG2Q8N1P7 616 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 BBS5Q8N3I7 341 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 GPRC5AQ8NFJ5 357 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 TRIM58Q8NG06 486 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 OR2T3Q8NH03 318 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 IRGQQ8WZA9 623 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 SEPT8Q92599 483 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 AZIN2Q96A70 460 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 ZNF583Q96ND8 569 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 PRMT1Q99873 361 aaKnown RBP3.88□□□□□ -1.79
VPS13D-207ENST00000476169 ALKBH7Q9BT30 221 aaPredicted RBP3.88□□□□□ -1.79
VPS13D-207ENST00000476169 ALG12Q9BV10 488 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 SPRY4Q9C004 299 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 SPRTNQ9H040 489 aaPredicted RBP3.88□□□□□ -1.79
VPS13D-207ENST00000476169 RAB6CQ9H0N0 254 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 SDCBP2Q9H190 292 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 MTIF3Q9H2K0 278 aaKnown RBP3.88□□□□□ -1.79
VPS13D-207ENST00000476169 ACTL8Q9H568 366 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 C10orf88Q9H8K7 445 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 MARCH7Q9H992 704 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 TRPV5Q9NQA5 729 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 HPS4Q9NQG7 708 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 C6orf203Q9P0P8 240 aaPredicted RBP3.88□□□□□ -1.79
VPS13D-207ENST00000476169 ERVK-19Q9WJR5 959 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 AMDHD2Q9Y303 409 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 ATG4BQ9Y4P1 393 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 INSL5Q9Y5Q6 135 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 PTGDR2Q9Y5Y4 395 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 COLEC10Q9Y6Z7 277 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 KIF16BQ96L93 1317 aa3.88□□□□□ -1.79
VPS13D-207ENST00000476169 SOGA1O94964 1423 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 IFT140Q96RY7 1462 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 CUX1P39880 1505 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 LY6G6EA0A0G2JKS1 128 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 GSAPA4D1B5 854 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 OR6C75A6NL08 312 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 FAM25EA8MYX2 175 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 INAFM1C9JVW0 142 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 TNFRSF13BO14836 293 aaPredicted RBP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 SERPINI2O75830 405 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 MBD3O95983 291 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 LIPFP07098 398 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 ASGR1P07306 291 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 IQCF3P0C7M6 154 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 HOXB2P14652 356 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 NCF2P19878 526 aaPredicted RBP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 CBLP22681 906 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 PTPN6P29350 595 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 ALDH1B1P30837 517 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 SRD5A2P31213 254 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 HOXD3P31249 432 aaPredicted RBP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 FCGR2BP31994 310 aaPredicted RBP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 OR1D2P34982 312 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 ADRA1AP35348 466 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 TMPOP42166 694 aaKnown RBP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 TNFRSF4P43489 277 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 RFX2P48378 723 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 SLC1A6P48664 564 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 THOP1P52888 689 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 HMGA2P52926 109 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 NAPAP54920 295 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms