RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 CRLF3Q8IUI8 442 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 MMP25Q9NPA2 562 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 STMN3Q9NZ72 180 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 CLDN16Q9Y5I7 305 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 TRAV17A0A0B4J275 112 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 OR5H15A6NDH6 313 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 NDC80O14777 642 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 DDAH2O95865 285 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 SERPINA6P08185 405 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 MST1P26927 711 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 SLC26A5P58743 744 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 ZNF33BQ06732 778 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 RGS1Q08116 209 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 RBBP5Q15291 538 aaKnown RBP13.25□□□□□ -0.29
UPF3A-204ENST00000475218 TOR1AIP1Q5JTV8 583 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 ACER2Q5QJU3 275 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 BEST3Q8N1M1 668 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 KIF2BQ8N4N8 673 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 TRPV3Q8NET8 790 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 M1APQ8TC57 530 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 SIGLEC12Q96PQ1 595 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 PHACTR1Q9C0D0 580 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 NECTIN3Q9NQS3 549 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 C19orf25Q9UFG5 118 aaPredicted RBP13.25□□□□□ -0.29
UPF3A-204ENST00000475218 ZNF490Q9ULM2 529 aaPredicted RBP13.25□□□□□ -0.29
UPF3A-204ENST00000475218 SLC5A6Q9Y289 635 aa13.25□□□□□ -0.29
UPF3A-204ENST00000475218 A8MUI8 341 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 B4GALT2O60909 372 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 SLC35E2BP0CK96 405 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 GNAZP19086 355 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 MAOAP21397 527 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 MAGEA4P43358 317 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 RUNX2Q13950 521 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 SLBPQ14493 270 aaKnown RBP eCLIP13.24□□□□□ -0.29
UPF3A-204ENST00000475218 ABHD17BQ5VST6 288 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 FAM180AQ6UWF9 173 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 FRA10AC1Q70Z53 315 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 ABHD13Q7L211 337 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 CMC1Q7Z7K0 106 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 CA13Q8N1Q1 262 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 PDPRQ8NCN5 879 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 MDS2Q8NDY4 140 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 HES7Q9BYE0 225 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 OLAHQ9NV23 265 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 PTBP2Q9UKA9 531 aaKnown RBP13.24□□□□□ -0.29
UPF3A-204ENST00000475218 OSGIN2Q9Y236 505 aa13.24□□□□□ -0.29
UPF3A-204ENST00000475218 A0A0G2JN53 185 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 ESYT3A0FGR9 886 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 HMX2A2RU54 273 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 LRIT2A6NDA9 550 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 TGFBR3LH3BV60 316 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 PRAMEF2O60811 474 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 GSTA2P09210 222 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 COL8A1P27658 744 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 HSPA7P48741 367 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 HNRNPFP52597 415 aaKnown RBP13.23□□□□□ -0.29
UPF3A-204ENST00000475218 RAB10P61026 200 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 PMP22Q01453 160 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 TUBA3CQ13748 450 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 EXT1Q16394 746 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 TUBA3EQ6PEY2 450 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 TMIGD1Q6UXZ0 262 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 QSOX2Q6ZRP7 698 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 GPSM1Q86YR5 675 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 TBC1D19Q8N5T2 526 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 BCORP1Q8N888 145 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 TMEM52Q8NDY8 209 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 NFAM1Q8NET5 270 aaPredicted RBP13.23□□□□□ -0.29
UPF3A-204ENST00000475218 ELP5Q8TE02 316 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 FBF1Q8TES7 1133 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 NR4A3Q92570 626 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 KIAA1191Q96A73 305 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 MS4A6EQ96DS6 147 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 WDR34Q96EX3 536 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 QRFPRQ96P65 431 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.23□□□□□ -0.29
UPF3A-204ENST00000475218 KCNK13Q9HB14 408 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 ZDHHC18Q9NUE0 388 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 ANKRD10Q9NXR5 420 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 LRBAP50851 2863 aa13.23□□□□□ -0.29
UPF3A-204ENST00000475218 DIDO1Q9BTC0 2240 aaKnown RBP13.23□□□□□ -0.29
UPF3A-204ENST00000475218 TCRBV16S1A1N1A0A5B0 115 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 STMN1P16949 149 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 CD96P40200 585 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 SLC12A2P55011 1212 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 KCNK10P57789 538 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 OR4D2P58180 307 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 AP2B1P63010 937 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 SLC7A5Q01650 507 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 INAQ16352 499 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 ADPRMQ3LIE5 342 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 CDKL4Q5MAI5 379 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 ZNF468Q5VIY5 522 aaPredicted RBP13.22□□□□□ -0.29
UPF3A-204ENST00000475218 ISCA2Q86U28 154 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 CCDC25Q86WR0 208 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 PPM1NQ8N819 430 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 CDKL2Q92772 493 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 TSPAN17Q96FV3 270 aa13.22□□□□□ -0.29
UPF3A-204ENST00000475218 MAGEB10Q96LZ2 347 aaPredicted RBP13.22□□□□□ -0.29
UPF3A-204ENST00000475218 LPAR4Q99677 370 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms