RNA–Protein interactions for RNA: ENST00000466100.1

VCP-204, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 508 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-204ENST00000466100 EPN3Q9H201 632 aa10.59□□□□□ -0.71
VCP-204ENST00000466100 WDR55Q9H6Y2 383 aaPredicted RBP10.59□□□□□ -0.71
VCP-204ENST00000466100 AKTIPQ9H8T0 292 aa10.59□□□□□ -0.71
VCP-204ENST00000466100 PRDM7Q9NQW5 492 aa10.59□□□□□ -0.71
VCP-204ENST00000466100 C1orf109Q9NX04 203 aa10.59□□□□□ -0.71
VCP-204ENST00000466100 AKAP7Q9P0M2 348 aaPredicted RBP10.59□□□□□ -0.71
VCP-204ENST00000466100 SERTAD3Q9UJW9 196 aa10.59□□□□□ -0.71
VCP-204ENST00000466100 SATB2Q9UPW6 733 aa10.59□□□□□ -0.71
VCP-204ENST00000466100 WASF3Q9UPY6 502 aa10.59□□□□□ -0.71
VCP-204ENST00000466100 PCDHB3Q9Y5E6 796 aa10.59□□□□□ -0.71
VCP-204ENST00000466100 SLC22A7Q9Y694 548 aa10.59□□□□□ -0.71
VCP-204ENST00000466100 CROCCQ5TZA2 2017 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 SAP18O00422 153 aaKnown RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 RTCAO00442 366 aaKnown RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 POLR1CO15160 346 aaPredicted RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 ZNF749O43361 778 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 ERI3O43414 337 aaKnown RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 FOXS1O43638 330 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 GALR3O60755 368 aaPredicted RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 EEDO75530 441 aaKnown RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 B3GALT4O96024 378 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 TROVE2P10155 538 aaKnown RBP eCLIP10.58□□□□□ -0.72
VCP-204ENST00000466100 ALOX12P18054 663 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 ITGAXP20702 1163 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 HOXD11P31277 338 aaPredicted RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 TSFMP43897 325 aaKnown RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 RAE1P78406 368 aaKnown RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 CAMK2BQ13554 666 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 FAM53BQ14153 422 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 PUM1Q14671 1186 aaKnown RBP eCLIP10.58□□□□□ -0.72
VCP-204ENST00000466100 NR6A1Q15406 480 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 IMPG1Q17R60 797 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 C3orf38Q5JPI3 329 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 C6orf136Q5SQH8 315 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 YOD1Q5VVQ6 348 aaPredicted RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 ZNF385CQ66K41 422 aaPredicted RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 OGFOD2Q6N063 350 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 RHBDD2Q6NTF9 364 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 GALNT18Q6P9A2 607 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 ABHD13Q7L211 337 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 COMMD6Q7Z4G1 85 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 ZFAND4Q86XD8 727 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 PPP1R3BQ86XI6 285 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 GPR135Q8IZ08 494 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 C1orf52Q8N6N3 182 aaKnown RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 AMER3Q8N944 861 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 TTC29Q8NA56 475 aaPredicted RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 SLC38A9Q8NBW4 561 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 RGMAQ96B86 450 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 PPP3R2Q96LZ3 170 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 KCNC2Q96PR1 638 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 C17orf62Q9BQA9 187 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 TBCDQ9BTW9 1192 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 DDA1Q9BW61 102 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 SORBS1Q9BX66 1292 aaKnown RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 DDX31Q9H8H2 851 aaKnown RBP10.58□□□□□ -0.72
VCP-204ENST00000466100 LRTM1Q9HBL6 345 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 PFDN4Q9NQP4 134 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 CUTCQ9NTM9 273 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 RIC8BQ9NVN3 520 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 SLC39A1Q9NY26 324 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 KLHL14Q9P2G3 628 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 PISDQ9UG56 409 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 DCTN4Q9UJW0 460 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 PCDHGA8Q9Y5G5 932 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 PCDHGA3Q9Y5H0 932 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 CHD8Q9HCK8 2581 aa10.58□□□□□ -0.72
VCP-204ENST00000466100 A0A0A6YYD5 115 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 A0A0G2JN53 185 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 GOLGA8QA0A0J9YX86 632 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 GOLGA8OA6NCC3 632 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 URADA6NGE7 173 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 C9orf172C9J069 976 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 GOLGA8NF8WBI6 632 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 DSCR3O14972 297 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 SNX3O60493 162 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 DIAPH2O60879 1101 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 VPS4BO75351 444 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 SCRG1O75711 98 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 NSA2O95478 260 aaKnown RBP10.57□□□□□ -0.72
VCP-204ENST00000466100 ALDOCP09972 364 aaKnown RBP10.57□□□□□ -0.72
VCP-204ENST00000466100 ACPPP15309 386 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 ZNF28P17035 718 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 IL1RNP18510 177 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 ATP5A1P25705 553 aaKnown RBP10.57□□□□□ -0.72
VCP-204ENST00000466100 TPP2P29144 1249 aaPredicted RBP10.57□□□□□ -0.72
VCP-204ENST00000466100 TIA1P31483 386 aaKnown RBP eCLIP10.57□□□□□ -0.72
VCP-204ENST00000466100 RORAP35398 523 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 RAP1GDS1P52306 607 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 PLA2G16P53816 162 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 RAB8AP61006 207 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 RPL38P63173 70 aaKnown RBP10.57□□□□□ -0.72
VCP-204ENST00000466100 COL9A2Q14055 689 aaPredicted RBP10.57□□□□□ -0.72
VCP-204ENST00000466100 HERC3Q15034 1050 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 MUM1Q2TAK8 710 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 SMU1Q2TAY7 513 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 AP5B1Q2VPB7 878 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 FAM214AQ32MH5 1076 aa10.57□□□□□ -0.72
VCP-204ENST00000466100 LSM12Q3MHD2 195 aaKnown RBP10.57□□□□□ -0.72
VCP-204ENST00000466100 ATP6AP1LQ52LC2 224 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms