RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	THOC5	Q13769	683 aa	Known RBP	10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	MAPKAPK3	Q16644	382 aa		10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	HSP90AA5P	Q58FG0	334 aa		10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	CATSPERE	Q5SY80	951 aa		10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	LRRC8E	Q6NSJ5	796 aa		10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	UGT3A1	Q6NUS8	523 aa		10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	MEX3B	Q6ZN04	569 aa	Known RBP	10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	SULF2	Q8IWU5	870 aa		10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	CNTN4	Q8IWV2	1026 aa		10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	ZFP62	Q8NB50	900 aa	Predicted RBP	10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	FAM98A	Q8NCA5	519 aa	Known RBP	10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	MAIP1	Q8WWC4	291 aa		10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	PYCR2	Q96C36	320 aa		10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	SDCCAG3	Q96C92	435 aa		10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	XAB2	Q9HCS7	855 aa	Known RBP	10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	C20orf96	Q9NUD7	363 aa	Predicted RBP	10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	SAMD15	Q9P1V8	674 aa		10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	TNFRSF10D	Q9UBN6	386 aa		10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	10.43	□□□□□ -0.74
PTPN7-204	ENST00000462815	NAV3	Q8IVL0	2385 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815		A0A1B0GTH9	108 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	TMEM200C	A6NKL6	621 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	PRRG2	O14669	202 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	DIAPH2	O60879	1101 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	B4GALT2	O60909	372 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	TOX	O94900	526 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	TFEB	P19484	476 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	JAK1	P23458	1154 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	RFC3	P40938	356 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	MEOX1	P50221	254 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	CCR8	P51685	355 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	SARNP	P82979	210 aa	Known RBP	10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	REEP5	Q00765	189 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	ACTN3	Q08043	901 aa	Predicted RBP	10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	CYP1B1	Q16678	543 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	PPP1R3A	Q16821	1122 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	DUPD1	Q68J44	220 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	KIAA0408	Q6ZU52	694 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	MDGA2	Q7Z553	956 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	CD163	Q86VB7	1156 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	SCUBE1	Q8IWY4	988 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	RASGEF1C	Q8N431	466 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	POGLUT1	Q8NBL1	392 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	CREB3L4	Q8TEY5	395 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	NEIL2	Q969S2	332 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	SNF8	Q96H20	258 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	PTCHD1	Q96NR3	888 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	HAUS8	Q9BT25	410 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	FAM167B	Q9BTA0	163 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	CCDC68	Q9H2F9	335 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	KLHL31	Q9H511	634 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	HOMER3	Q9NSC5	361 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	IARS2	Q9NSE4	1012 aa	Known RBP	10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	DEPP	Q9NTK1	212 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	TRMT6	Q9UJA5	497 aa	Known RBP	10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	ZFP69B	Q9UJL9	534 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	PPT2	Q9UMR5	302 aa		10.42	□□□□□ -0.74
PTPN7-204	ENST00000462815	PINLYP	A6NC86	204 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	OR1F1	O43749	312 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	HS6ST1	O60243	411 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	PRKN	O60260	465 aa	Predicted RBP	10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	PRMT3	O60678	531 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	AHSG	P02765	367 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	MSX1	P28360	303 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	PTGS2	P35354	604 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	AHR	P35869	848 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	CRYM	Q14894	314 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	SBSN	Q6UWP8	590 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	DMRTC2	Q8IXT2	367 aa	Predicted RBP	10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	CA13	Q8N1Q1	262 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	TMEM52	Q8NDY8	209 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	OR52N2	Q8NGI0	321 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	LILRB4	Q8NHJ6	448 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	CALML6	Q8TD86	181 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	CA5BP1	Q8WTZ4	195 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	CHTF18	Q8WVB6	975 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	FBXL8	Q96CD0	374 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	LINGO1	Q96FE5	620 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	CLK4	Q9HAZ1	481 aa	Known RBP	10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	PRDM9	Q9NQV7	894 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	ZFAT	Q9P243	1243 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	SLC17A6	Q9P2U8	582 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	PYCARD	Q9ULZ3	195 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	RNF6	Q9Y252	685 aa		10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	KLF13	Q9Y2Y9	288 aa	Predicted RBP	10.41	□□□□□ -0.74
PTPN7-204	ENST00000462815	NKX2-6	A6NCS4	301 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	PEX1	O43933	1283 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	BANF1	O75531	89 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	TBX6	O95947	436 aa	Predicted RBP	10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	TPO	P07202	933 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	CCDC175	P0C221	793 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	PPP2R1B	P30154	601 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	GRK3	P35626	688 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	RGS4	P49798	205 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	HNRNPF	P52597	415 aa	Known RBP	10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	AP1S2	P56377	157 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	RAB8A	P61006	207 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	TERF2	Q15554	542 aa		10.4	□□□□□ -0.74
PTPN7-204	ENST00000462815	MSS51	Q4VC12	460 aa		10.4	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms