RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	ZGLP1	P0C6A0	271 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	ICAM2	P13598	275 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	RAB38	P57729	211 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	KHDRBS2	Q5VWX1	349 aa	Known RBP	10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	FRG2	Q64ET8	278 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	RNF165	Q6ZSG1	346 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	ZIM3	Q96PE6	472 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	FRG2B	Q96QU4	278 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	PELO	Q9BRX2	385 aa	Known RBP	10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	WDR41	Q9HAD4	459 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	STARD5	Q9NSY2	213 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	OXSM	Q9NWU1	459 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	IL17B	Q9UHF5	180 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	LRIT2	A6NDA9	550 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	ZNF888	P0CJ79	500 aa	Predicted RBP	10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	PCSK2	P16519	638 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	YBX1	P67809	324 aa	Known RBP	10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	TRAF3	Q13114	568 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	DEPDC1	Q5TB30	811 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	ZCCHC7	Q8N3Z6	543 aa	Known RBP	10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	ANKRD53	Q8N9V6	530 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	PLPP5	Q8NEB5	264 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	OR2W6P	Q8NHA6	318 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	MS4A6E	Q96DS6	147 aa		10.14	□□□□□ -0.79
UBR4-208	ENST00000459947	ERI3	O43414	337 aa	Known RBP	10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	DDX5	P17844	614 aa	Known RBP	10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	EPOR	P19235	508 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	TLX1	P31314	330 aa	Predicted RBP	10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	ZRSR2	Q15696	482 aa	Known RBP	10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	UNC50	Q53HI1	259 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	PRAMEF17	Q5VTA0	474 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	CYP4X1	Q8N118	509 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	C4orf33	Q8N1A6	199 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	TMEM151A	Q8N4L1	468 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	OR51Q1	Q8NH59	317 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	ADAMTS17	Q8TE56	1095 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	CPNE5	Q9HCH3	593 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	NAALAD2	Q9Y3Q0	740 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	URB1	O60287	2271 aa	Known RBP	10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	MKRN2OS	H3BPM6	223 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	ATXN7	O15265	892 aa	Predicted RBP	10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	HP	P00738	406 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	ACPP	P15309	386 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	OR1D4	P47884	311 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	CYP4F2	P78329	520 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	JMJD6	Q6NYC1	403 aa	Predicted RBP	10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	ABHD17C	Q6PCB6	329 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	C19orf48	Q6RUI8	117 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	MRGPRE	Q86SM8	312 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	NUDT13	Q86X67	352 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	ZC3H7A	Q8IWR0	971 aa	Known RBP	10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	ZNF595	Q8IYB9	648 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	ZNF740	Q8NDX6	193 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	OR9A4	Q8NGU2	314 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	TBC1D20	Q96BZ9	403 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	SPSB2	Q99619	263 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	CCT7	Q99832	543 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	SPNS1	Q9H2V7	528 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	C3orf18	Q9UK00	162 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	ZNF490	Q9ULM2	529 aa	Predicted RBP	10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	WBP11	Q9Y2W2	641 aa	Known RBP	10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	MDC1	Q14676	2089 aa	Known RBP	10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	ESRRB	O95718	433 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	NEFH	P12036	1026 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	SOX8	P57073	446 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	TRA2B	P62995	288 aa	Known RBP	10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	QSOX2	Q6ZRP7	698 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	ESAM	Q96AP7	390 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	ATP13A2	Q9NQ11	1180 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	ACSS2	Q9NR19	701 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947	EMCN	Q9ULC0	261 aa		10.13	□□□□□ -0.79
UBR4-208	ENST00000459947		G3V2L1	256 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	OR7A17	O14581	309 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	KLF7	O75840	302 aa	Predicted RBP	10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	SIX3	O95343	332 aa	Predicted RBP	10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	FH	P07954	510 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	SBK3	P0C264	359 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	SSR2	P43308	183 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	AIMP2	Q13155	320 aa	Known RBP	10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	TBR1	Q16650	682 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	FAM199X	Q6PEV8	388 aa	Predicted RBP	10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	FRMD7	Q6ZUT3	714 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	AMER3	Q8N944	861 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	KCT2	Q8NC54	265 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	PPP1R14C	Q8TAE6	165 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	TM9SF4	Q92544	642 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	TMEM237	Q96Q45	408 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	SEMA4B	Q9NPR2	832 aa	Predicted RBP	10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	C5AR2	Q9P296	337 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	PCDHGA9	Q9Y5G4	932 aa	Known RBP	10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	MAGEB17	A8MXT2	336 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	ALOX12B	O75342	701 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	ALPP	P05187	535 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	IL1RN	P18510	177 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	OTX2	P32243	289 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	HSD17B7	P56937	341 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	TNFAIP8L3	Q5GJ75	292 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	RIPOR1	Q6ZS17	1223 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	CCNYL1	Q8N7R7	359 aa		10.12	□□□□□ -0.79
UBR4-208	ENST00000459947	CLEC1A	Q8NC01	280 aa		10.12	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms