RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 AGTR2P50052 363 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 PLA2G16P53816 162 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 BTG2P78543 158 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 CBLBQ13191 982 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 DOC2AQ14183 400 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 TLR1Q15399 786 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 PDK4Q16654 411 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 ABHD17BQ5VST6 288 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 HIST2H2BCQ6DN03 193 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 SULT1C3Q6IMI6 304 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 FAM180AQ6UWF9 173 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 IGFL2Q6UWQ7 119 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 TMIGD1Q6UXZ0 262 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 SLCO4C1Q6ZQN7 724 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 BEST3Q8N1M1 668 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 KRT78Q8N1N4 520 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 CA13Q8N1Q1 262 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 AFAP1L2Q8N4X5 818 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 FAM47BQ8NA70 645 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 PDPRQ8NCN5 879 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 GRHL3Q8TE85 626 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 CREB3L4Q8TEY5 395 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 SREK1Q8WXA9 508 aaKnown RBP9.11□□□□□ -0.95
USP54-207ENST00000451492 PSMF1Q92530 271 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 KIAA1191Q96A73 305 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 TBC1D20Q96BZ9 403 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 NXNL1Q96CM4 212 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 PTCHD1Q96NR3 888 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 OR1F2PQ96R84 312 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 CDC42EP4Q9H3Q1 356 aaKnown RBP9.11□□□□□ -0.95
USP54-207ENST00000451492 COPS7BQ9H9Q2 264 aaPredicted RBP9.11□□□□□ -0.95
USP54-207ENST00000451492 SNX15Q9NRS6 342 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 AGPAT4Q9NRZ5 378 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 LANCL2Q9NS86 450 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 NUDT4Q9NZJ9 180 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 MTRF1LQ9UGC7 380 aaKnown RBP9.11□□□□□ -0.95
USP54-207ENST00000451492 DMGDHQ9UI17 866 aaKnown RBP9.11□□□□□ -0.95
USP54-207ENST00000451492 ESPL1Q14674 2120 aa9.11□□□□□ -0.95
USP54-207ENST00000451492 NBPF19A0A087WUL8 3843 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 MYOCOSA0A1B0GUC4 107 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 A0A1W2PQ72 361 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 MAGEB17A8MXT2 336 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 PCDH17O14917 1159 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 PRAMEF4O60810 478 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 SERPINA6P08185 405 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 CTAGE8P0CG41 777 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 RNH1P13489 461 aaKnown RBP9.1□□□□□ -0.95
USP54-207ENST00000451492 CD22P20273 847 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 CERS1P27544 350 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 MSH2P43246 934 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 TSFMP43897 325 aaKnown RBP9.1□□□□□ -0.95
USP54-207ENST00000451492 KCNC1P48547 511 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 STXBP1P61764 594 aaKnown RBP9.1□□□□□ -0.95
USP54-207ENST00000451492 PMP22Q01453 160 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 IRF8Q02556 426 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 ILF2Q12905 390 aaKnown RBP9.1□□□□□ -0.95
USP54-207ENST00000451492 CHIT1Q13231 466 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 NAB1Q13506 487 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 DDX39BQ13838 428 aaKnown RBP9.1□□□□□ -0.95
USP54-207ENST00000451492 PRAMEF9Q5VWM5 478 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 TRIM40Q6P9F5 258 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 RIPOR1Q6ZS17 1223 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 LRRC70Q7Z2Q7 622 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 CLNKQ7Z7G1 428 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 MYLK4Q86YV6 388 aaPredicted RBP9.1□□□□□ -0.95
USP54-207ENST00000451492 CRLF3Q8IUI8 442 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 CTAGE4Q8IX94 777 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 KLHDC8AQ8IYD2 350 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 RNF175Q8N4F7 328 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 KIF2BQ8N4N8 673 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 SUN3Q8TAQ9 357 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 STAG3L4Q8TBR4 150 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 GAL3ST3Q96A11 431 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 PTCD3Q96EY7 689 aaKnown RBP9.1□□□□□ -0.95
USP54-207ENST00000451492 UBXN10Q96LJ8 280 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 IMMP1LQ96LU5 166 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 LMF1Q96S06 567 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 ATOH8Q96SQ7 321 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 FMO2Q99518 471 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 LPAR4Q99677 370 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 VPS11Q9H270 941 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 NMRAL1Q9HBL8 299 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 NECTIN3Q9NQS3 549 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 IGSF5Q9NSI5 407 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 GPRC5BQ9NZH0 403 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 CPSF2Q9P2I0 782 aaKnown RBP9.1□□□□□ -0.95
USP54-207ENST00000451492 OPTCQ9UBM4 332 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 ACOT9Q9Y305 439 aa9.1□□□□□ -0.95
USP54-207ENST00000451492 CROCCQ5TZA2 2017 aa9.09□□□□□ -0.95
USP54-207ENST00000451492 A0A087X1B8 175 aa9.09□□□□□ -0.95
USP54-207ENST00000451492 CLEC18AA5D8T8 446 aa9.09□□□□□ -0.95
USP54-207ENST00000451492 LRRC14BA6NHZ5 514 aa9.09□□□□□ -0.95
USP54-207ENST00000451492 POC1B-GALNT4F8VUJ3 575 aa9.09□□□□□ -0.95
USP54-207ENST00000451492 SAP18O00422 153 aaKnown RBP9.09□□□□□ -0.95
USP54-207ENST00000451492 RTCAO00442 366 aaKnown RBP9.09□□□□□ -0.95
USP54-207ENST00000451492 MAN1A2O60476 641 aa9.09□□□□□ -0.95
USP54-207ENST00000451492 PRMT3O60678 531 aa9.09□□□□□ -0.95
USP54-207ENST00000451492 KERAO60938 352 aa9.09□□□□□ -0.95
USP54-207ENST00000451492 CBX6O95503 412 aa9.09□□□□□ -0.95
USP54-207ENST00000451492 C2P06681 752 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms