RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TXNDC16Q9P2K2 825 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 MMACHCQ9Y4U1 282 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 TEX264Q9Y6I9 313 aa6.65□□□□□ -1.34
VPS41-208ENST00000448833 MYO9AB2RTY4 2548 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 IGHV3-20A0A0C4DH32 117 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 ASPDHA6ND91 283 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 ANKDD1BA6NHY2 528 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 GABRR3A8MPY1 467 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 PRRG2O14669 202 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 ASNA1O43681 348 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 GUCA1CO95843 209 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 F10P00742 488 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 CELA2AP08217 269 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 ZNF888P0CJ79 500 aaPredicted RBP6.64□□□□□ -1.35
VPS41-208ENST00000448833 C1GALT1C1LP0DN25 315 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 ZNF37AP17032 561 aaPredicted RBP6.64□□□□□ -1.35
VPS41-208ENST00000448833 ELAVL4P26378 380 aaKnown RBP6.64□□□□□ -1.35
VPS41-208ENST00000448833 IVDP26440 423 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 TRHRP34981 398 aaPredicted RBP6.64□□□□□ -1.35
VPS41-208ENST00000448833 HLCSP50747 726 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 CLCN2P51788 898 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 HSD17B7P56937 341 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 POU4F1Q01851 419 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 CALCOCO2Q13137 446 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 CBLBQ13191 982 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 BIKQ13323 160 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 LAPTM5Q13571 262 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 RBBP5Q15291 538 aaKnown RBP6.64□□□□□ -1.35
VPS41-208ENST00000448833 MAPKAPK3Q16644 382 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 HIST2H2ACQ16777 129 aaPredicted RBP6.64□□□□□ -1.35
VPS41-208ENST00000448833 CATSPEREQ5SY80 951 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 RBM20Q5T481 1227 aaKnown RBP6.64□□□□□ -1.35
VPS41-208ENST00000448833 STEAP4Q687X5 459 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 HIST2H2AA3Q6FI13 130 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 PAOXQ6QHF9 649 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 NXPE4Q6UWF7 544 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 SBSNQ6UWP8 590 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 TMIGD1Q6UXZ0 262 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 MBOAT1Q6ZNC8 495 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 Q6ZPB1 254 aaPredicted RBP6.64□□□□□ -1.35
VPS41-208ENST00000448833 PRSS41Q7RTY9 318 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 MAATS1Q7Z4T9 603 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 PDSS2Q86YH6 399 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 SPPL2CQ8IUH8 684 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 CYP4X1Q8N118 509 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 GHDCQ8N2G8 530 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 SRFBP1Q8NEF9 429 aaKnown RBP6.64□□□□□ -1.35
VPS41-208ENST00000448833 ELP5Q8TE02 316 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 UTP15Q8TED0 518 aaKnown RBP6.64□□□□□ -1.35
VPS41-208ENST00000448833 ITLN2Q8WWU7 325 aaPredicted RBP6.64□□□□□ -1.35
VPS41-208ENST00000448833 KIAA1191Q96A73 305 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 PYCR2Q96C36 320 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 CFAP36Q96G28 342 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 GPR137Q96N19 417 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 OR4K3Q96R72 315 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 CCDC77Q9BR77 488 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 DEFB126Q9BYW3 111 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 SLC6A16Q9GZN6 736 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 ROGDIQ9GZN7 287 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 EHD1Q9H4M9 534 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 CDCP1Q9H5V8 836 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 NT5DC2Q9H857 520 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 TRIM45Q9H8W5 580 aaPredicted RBP6.64□□□□□ -1.35
VPS41-208ENST00000448833 KLHL1Q9NR64 748 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 MOCS1Q9NZB8 636 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 GPRC5BQ9NZH0 403 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 CTNNAL1Q9UBT7 734 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 CHMP2BQ9UQN3 213 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 SLC22A14Q9Y267 594 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 ZNF835Q9Y2P0 537 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 KLF13Q9Y2Y9 288 aaPredicted RBP6.64□□□□□ -1.35
VPS41-208ENST00000448833 OARD1Q9Y530 152 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 SAR1BQ9Y6B6 198 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 NCOA6Q14686 2063 aaPredicted RBP6.64□□□□□ -1.35
VPS41-208ENST00000448833 PCNX1Q96RV3 2341 aa6.64□□□□□ -1.35
VPS41-208ENST00000448833 APCP25054 2843 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 TCRBV16S1A1N1A0A5B0 115 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 ARHGAP10A1A4S6 786 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 SAGE2PA6NJ88 616 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 EFCAB8A8MWE9 144 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 NPIPA5E9PKD4 350 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 FAM227AF5H4B4 570 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 CLGNO14967 610 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 EIF3HO15372 352 aaKnown RBP eCLIP6.63□□□□□ -1.35
VPS41-208ENST00000448833 B3GALT2O43825 422 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 B4GALT2O60909 372 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 CLEC3AO75596 197 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 SLC25A12O75746 678 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 CDC123O75794 336 aaPredicted RBP6.63□□□□□ -1.35
VPS41-208ENST00000448833 STATHP02808 62 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 S100BP04271 92 aaPredicted RBP6.63□□□□□ -1.35
VPS41-208ENST00000448833 GSTA2P09210 222 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 SMIM10L1P0DMW3 83 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 COX6B1P14854 86 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 ABOP16442 354 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 SAT1P21673 171 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 MST1P26927 711 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 HTR1EP28566 365 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 TNFRSF8P28908 595 aa6.63□□□□□ -1.35
VPS41-208ENST00000448833 MLF1P58340 268 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms