RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 GRIA3P42263 894 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 TSFMP43897 325 aaKnown RBP5.69□□□□□ -1.5
HMGB3-202ENST00000419110 GPR3P46089 330 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 RXRGP48443 463 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 SLC7A2P52569 658 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 ATXN3P54252 364 aaPredicted RBP5.69□□□□□ -1.5
HMGB3-202ENST00000419110 GPLD1P80108 840 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 SRSF11Q05519 484 aaKnown RBP5.69□□□□□ -1.5
HMGB3-202ENST00000419110 KLC1Q07866 573 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 BNIP2Q12982 314 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 PWP1Q13610 501 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 MAP7Q14244 749 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 FLOT2Q14254 428 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 SUZ12Q15022 739 aaKnown RBP5.69□□□□□ -1.5
HMGB3-202ENST00000419110 NR0B2Q15466 257 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 MAPKAPK3Q16644 382 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 SPATS1Q496A3 300 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 VPS26BQ4G0F5 336 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 TRIM61Q5EBN2 209 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 CCNYL2Q5T2Q4 361 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 ANXA8L1Q5VT79 327 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 CYB5D1Q6P9G0 228 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 FIGLAQ6QHK4 219 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 ABHD13Q7L211 337 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 ZNF438Q7Z4V0 828 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 VN1R5Q7Z5H4 357 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 BMP8AQ7Z5Y6 402 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 NET1Q7Z628 596 aaPredicted RBP5.69□□□□□ -1.5
HMGB3-202ENST00000419110 GPR180Q86V85 440 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 C17orf82Q86X59 251 aaPredicted RBP5.69□□□□□ -1.5
HMGB3-202ENST00000419110 PLD3Q8IV08 490 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 FUNDC1Q8IVP5 155 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 FAM20CQ8IXL6 584 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 SLC35F3Q8IY50 421 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 MAML2Q8IZL2 1156 aaPredicted RBP5.69□□□□□ -1.5
HMGB3-202ENST00000419110 CARFQ8N187 725 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 DPP10Q8N608 796 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 KRTCAP2Q8N6L1 136 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 FAM13CQ8NE31 585 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 OR2L5Q8NG80 312 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 OR4C6Q8NH72 309 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 FBXO27Q8NI29 283 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 BAHD1Q8TBE0 780 aaPredicted RBP5.69□□□□□ -1.5
HMGB3-202ENST00000419110 ZCCHC10Q8TBK6 192 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 NT5CQ8TCD5 201 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 PROKR1Q8TCW9 393 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 CHTF18Q8WVB6 975 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 N4BP2L2Q92802 583 aaPredicted RBP5.69□□□□□ -1.5
HMGB3-202ENST00000419110 VPS33AQ96AX1 596 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 PPCDCQ96CD2 204 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 MTERF3Q96E29 417 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 ZDHHC12Q96GR4 267 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 ZNF764Q96H86 408 aaPredicted RBP5.69□□□□□ -1.5
HMGB3-202ENST00000419110 SLC45A3Q96JT2 553 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 ZC3H10Q96K80 434 aaKnown RBP5.69□□□□□ -1.5
HMGB3-202ENST00000419110 OR2A14Q96R47 310 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 OR52E6Q96RD3 313 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 NRTNQ99748 197 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 C17orf62Q9BQA9 187 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 REXO4Q9GZR2 422 aaKnown RBP5.69□□□□□ -1.5
HMGB3-202ENST00000419110 TWSG1Q9GZX9 223 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 KCNH6Q9H252 994 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 MUC13Q9H3R2 512 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 SEMA6CQ9H3T2 930 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 ACTL8Q9H568 366 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 NEUROD4Q9HD90 331 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 GIMAP4Q9NUV9 329 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 DNAAF2Q9NVR5 837 aaKnown RBP5.69□□□□□ -1.5
HMGB3-202ENST00000419110 IRAK4Q9NWZ3 460 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 UCKL1Q9NWZ5 548 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 ADA2Q9NZK5 511 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 PHF11Q9UIL8 331 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 ENTPD4Q9Y227 616 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 WBP11Q9Y2W2 641 aaKnown RBP5.69□□□□□ -1.5
HMGB3-202ENST00000419110 L3MBTL1Q9Y468 752 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 AP1M2Q9Y6Q5 423 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 SPACA6W5XKT8 324 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 FER1L5A0AVI2 2057 aa5.69□□□□□ -1.5
HMGB3-202ENST00000419110 A0A096LPI6 279 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 A0A0J9YVX5 310 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 ASPDHA6ND91 283 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 FBP2O00757 339 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 TXNDC9O14530 226 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 RFXANKO14593 260 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 PDPK1O15530 556 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 ZSCAN9O15535 394 aaPredicted RBP5.68□□□□□ -1.5
HMGB3-202ENST00000419110 TNFSF14O43557 240 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 ERN1O75460 977 aaKnown RBP5.68□□□□□ -1.5
HMGB3-202ENST00000419110 RASSF9O75901 435 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 SCELO95171 688 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 ANP32DO95626 131 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 LMNAP02545 664 aaKnown RBP5.68□□□□□ -1.5
HMGB3-202ENST00000419110 IL3P08700 152 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 SP9P0CG40 484 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 NR2F6P10588 404 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 PVRP15151 417 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 GLB1P16278 677 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 PPIBP23284 216 aaKnown RBP5.68□□□□□ -1.5
HMGB3-202ENST00000419110 ME2P23368 584 aa5.68□□□□□ -1.5
HMGB3-202ENST00000419110 TACR1P25103 407 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms