RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 HENMT1Q5T8I9 393 aaKnown RBP9.46□□□□□ -0.89
SS18-203ENST00000415083 ERICH5Q6P6B1 374 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 SLCO4C1Q6ZQN7 724 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 ADIPOR2Q86V24 386 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 LRRC56Q8IYG6 542 aaPredicted RBP9.46□□□□□ -0.89
SS18-203ENST00000415083 TCEAL8Q8IYN2 117 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 CPXM2Q8N436 756 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 B3GNT7Q8NFL0 401 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 OR56A3Q8NH54 315 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 OR5AK3PQ8NH89 298 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 NFKBIDQ8NI38 313 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 ELMO1Q92556 727 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 TSEN34Q9BSV6 310 aaKnown RBP9.46□□□□□ -0.89
SS18-203ENST00000415083 TAPBPLQ9BX59 468 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 SORBS1Q9BX66 1292 aaKnown RBP9.46□□□□□ -0.89
SS18-203ENST00000415083 SLC46A2Q9BY10 475 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 BARHL1Q9BZE3 327 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 RC3H2Q9HBD1 1191 aaKnown RBP9.46□□□□□ -0.89
SS18-203ENST00000415083 RHCGQ9UBD6 479 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 HCFC2Q9Y5Z7 792 aa9.46□□□□□ -0.89
SS18-203ENST00000415083 GPC6Q9Y625 555 aaPredicted RBP9.46□□□□□ -0.89
SS18-203ENST00000415083 PDE4DIPQ5VU43 2346 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 SLC5A10A0PJK1 596 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 A6NL46 340 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 AP3D1O14617 1153 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 C6orf47O95873 294 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 SOD1P00441 154 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 CXCL10P02778 98 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 ANXA4P09525 319 aaPredicted RBP9.46□□□□□ -0.9
SS18-203ENST00000415083 DBTP11182 482 aaKnown RBP9.46□□□□□ -0.9
SS18-203ENST00000415083 CBLP22681 906 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 CTSKP43235 329 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 SLC15A1P46059 708 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 LIM2P55344 173 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 PCBP3P57721 371 aaKnown RBP9.46□□□□□ -0.9
SS18-203ENST00000415083 SP140Q13342 867 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 SF3B4Q15427 424 aaKnown RBP eCLIP9.46□□□□□ -0.94e-8■■■□□ 18.5
SS18-203ENST00000415083 TPGS2Q68CL5 300 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 ARMC8Q8IUR7 673 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 LAS2Q8IYD9 372 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 METTL4Q8N3J2 472 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 CPEB1Q9BZB8 566 aaKnown RBP9.46□□□□□ -0.9
SS18-203ENST00000415083 RUBCNLQ9H714 662 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 SGK2Q9HBY8 427 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 KIF17Q9P2E2 1029 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 SRRDQ9UH36 339 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 ZNF229Q9UJW7 825 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 RUVBL1Q9Y265 456 aaKnown RBP9.46□□□□□ -0.9
SS18-203ENST00000415083 AGRPO00253 132 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 TNFRSF11BO00300 401 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 TEX28O15482 410 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 SUV39H1O43463 412 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 UGDHO60701 494 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 GASTP01350 101 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 GABRR2P28476 465 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 MAPK1P28482 360 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 XCR1P46094 333 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 RGS6P49758 472 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 CDH12P55289 794 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 CYP4F2P78329 520 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 MEF2AQ02078 507 aaPredicted RBP9.46□□□□□ -0.9
SS18-203ENST00000415083 DUSP7Q16829 419 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 MICAQ29983 383 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 LEXMQ3ZCV2 418 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 DESI1Q6ICB0 168 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 DEFB128Q7Z7B8 93 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 SLC39A11Q8N1S5 342 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 ZNF740Q8NDX6 193 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 OR10G2Q8NGC3 310 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 OR4D11Q8NGI4 311 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 CD99L2Q8TCZ2 262 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 MED8Q96G25 268 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 MRPL9Q9BYD2 267 aaKnown RBP9.46□□□□□ -0.9
SS18-203ENST00000415083 SLAMF7Q9NQ25 335 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 PCDHGB3Q9Y5G1 929 aa9.46□□□□□ -0.9
SS18-203ENST00000415083 DSPPQ9NZW4 1301 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 H3BQ06 376 aaPredicted RBP9.45□□□□□ -0.9
SS18-203ENST00000415083 LEFTY2O00292 366 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 LILRB5O75023 590 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 GPX5O75715 221 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 SLC7A9P82251 487 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 LSM11P83369 360 aaKnown RBP eCLIP9.45□□□□□ -0.9
SS18-203ENST00000415083 ST3GAL4Q11206 333 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 FOXD4Q12950 439 aaPredicted RBP9.45□□□□□ -0.9
SS18-203ENST00000415083 PDE7AQ13946 482 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 SEC23BQ15437 767 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 SLC5A12Q1EHB4 618 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 MPP7Q5T2T1 576 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 ATAD3BQ5T9A4 648 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 CPTPQ5TA50 214 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.45□□□□□ -0.9
SS18-203ENST00000415083 BCDIN3DQ7Z5W3 292 aaKnown RBP9.45□□□□□ -0.9
SS18-203ENST00000415083 SVOPQ8N4V2 548 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 MINDY2Q8NBR6 621 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 OR4A15Q8NGL6 344 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 UCN3Q969E3 161 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 ASIC4Q96FT7 647 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 MRGPRX3Q96LB0 322 aa9.45□□□□□ -0.9
SS18-203ENST00000415083 RIOK2Q9BVS4 552 aaKnown RBP9.45□□□□□ -0.9
SS18-203ENST00000415083 HOXD1Q9GZZ0 328 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms