RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 RRP9O43818 475 aaKnown RBP13.55□□□□□ -0.24
SF3B1-204ENST00000414963 SH3BGRLO75368 114 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 STATHP02808 62 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 EIF2S1P05198 315 aaKnown RBP13.55□□□□□ -0.24
SF3B1-204ENST00000414963 CTSBP07858 339 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 G6PDP11413 515 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 SDC1P18827 310 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 GPX3P22352 226 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 TIA1P31483 386 aaKnown RBP eCLIP13.55□□□□□ -0.242e-10■■■■■ 34.9
SF3B1-204ENST00000414963 GSTM5P46439 218 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 GCGRP47871 477 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 C21orf58P58505 322 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 FAM53BQ14153 422 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 SQLEQ14534 574 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 GRM7Q14831 915 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 HERC3Q15034 1050 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 DEFB110Q30KQ9 67 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 PDCD4Q53EL6 469 aaKnown RBP13.55□□□□□ -0.24
SF3B1-204ENST00000414963 PHF19Q5T6S3 580 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 YOD1Q5VVQ6 348 aaPredicted RBP13.55□□□□□ -0.24
SF3B1-204ENST00000414963 NIPAL1Q6NVV3 410 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 TLDC1Q6P9B6 456 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 CYP20A1Q6UW02 462 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 C6orf89Q6UWU4 347 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 CLNKQ7Z7G1 428 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 B3GNT8Q7Z7M8 397 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 CACTIN-AS1Q8N1I8 211 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 ZCCHC7Q8N3Z6 543 aaKnown RBP13.55□□□□□ -0.24
SF3B1-204ENST00000414963 AGBL5Q8NDL9 886 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 RCBTB1Q8NDN9 531 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 DEFB124Q8NES8 71 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.55□□□□□ -0.24
SF3B1-204ENST00000414963 N4BP2L2Q92802 583 aaPredicted RBP13.55□□□□□ -0.24
SF3B1-204ENST00000414963 ZNF501Q96CX3 271 aaPredicted RBP13.55□□□□□ -0.24
SF3B1-204ENST00000414963 CATSPER2Q96P56 530 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 TEFMQ96QE5 360 aaKnown RBP13.55□□□□□ -0.24
SF3B1-204ENST00000414963 C1orf50Q9BV19 199 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 SPRTNQ9H040 489 aaPredicted RBP13.55□□□□□ -0.24
SF3B1-204ENST00000414963 FANCEQ9HB96 536 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 A0A0A6YYD5 115 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 HYKKA2RU49 373 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 CAPN14A8MX76 684 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 C4orf51C9J302 202 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 SLC30A4O14863 429 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 PCDH7O60245 1069 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 GFRA3O60609 400 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 PRMT3O60678 531 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 EEDO75530 441 aaKnown RBP13.54□□□□□ -0.24
SF3B1-204ENST00000414963 OR2B3O76000 313 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 KLK1P06870 262 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 ANXA4P09525 319 aaPredicted RBP13.54□□□□□ -0.24
SF3B1-204ENST00000414963 ZNF888P0CJ79 500 aaPredicted RBP13.54□□□□□ -0.24
SF3B1-204ENST00000414963 CEACAM1P13688 526 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 ALOX12P18054 663 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 HIST1H1TP22492 207 aaPredicted RBP13.54□□□□□ -0.24
SF3B1-204ENST00000414963 ATP5A1P25705 553 aaKnown RBP13.54□□□□□ -0.24
SF3B1-204ENST00000414963 TPP2P29144 1249 aaPredicted RBP13.54□□□□□ -0.24
SF3B1-204ENST00000414963 CSTF2P33240 577 aaKnown RBP eCLIP13.54□□□□□ -0.243e-11■■■□□ 17
SF3B1-204ENST00000414963 PLA2G16P53816 162 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 ITGA1P56199 1179 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 CLDN8P56748 225 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 TRA2BP62995 288 aaKnown RBP13.54□□□□□ -0.24
SF3B1-204ENST00000414963 C16orf72Q14CZ0 275 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 RPS6KA2Q15349 733 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 GPR19Q15760 415 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 NDUFA9Q16795 377 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 FAM214AQ32MH5 1076 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 MRM1Q6IN84 353 aaKnown RBP13.54□□□□□ -0.24
SF3B1-204ENST00000414963 CYB5D1Q6P9G0 228 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 TRPM8Q7Z2W7 1104 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 SLCO6A1Q86UG4 719 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 NUDT13Q86X67 352 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 MIER2Q8N344 545 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 LIX1Q8N485 282 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 FITM2Q8N6M3 262 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 BMPERQ8N8U9 685 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 ACOT4Q8N9L9 421 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 OR1L3Q8NH93 324 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 SERINC2Q96SA4 455 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 C17orf62Q9BQA9 187 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 CCDC106Q9BWC9 280 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 ACTL8Q9H568 366 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 CLK4Q9HAZ1 481 aaKnown RBP13.54□□□□□ -0.24
SF3B1-204ENST00000414963 ZIM2Q9NZV7 527 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 POLR3HQ9Y535 204 aaPredicted RBP13.54□□□□□ -0.24
SF3B1-204ENST00000414963 FAM186AA6NE01 2351 aa13.54□□□□□ -0.24
SF3B1-204ENST00000414963 MDC1Q14676 2089 aaKnown RBP13.53□□□□□ -0.24
SF3B1-204ENST00000414963 A0A088AWK7 358 aa13.53□□□□□ -0.24
SF3B1-204ENST00000414963 PCNX2A6NKB5 2137 aa13.53□□□□□ -0.24
SF3B1-204ENST00000414963 CCT8L1PA6NM43 557 aa13.53□□□□□ -0.24
SF3B1-204ENST00000414963 B4E171 279 aa13.53□□□□□ -0.24
SF3B1-204ENST00000414963 TMEM150CB9EJG8 249 aa13.53□□□□□ -0.24
SF3B1-204ENST00000414963 PSMD12O00232 456 aaPredicted RBP13.53□□□□□ -0.24
SF3B1-204ENST00000414963 RTCAO00442 366 aaKnown RBP13.53□□□□□ -0.24
SF3B1-204ENST00000414963 GALR3O60755 368 aaPredicted RBP13.53□□□□□ -0.24
SF3B1-204ENST00000414963 ZNF10P21506 573 aaPredicted RBP13.53□□□□□ -0.24
SF3B1-204ENST00000414963 JAK1P23458 1154 aa13.53□□□□□ -0.24
SF3B1-204ENST00000414963 TACR1P25103 407 aa13.53□□□□□ -0.24
SF3B1-204ENST00000414963 TSPAN7P41732 249 aa13.53□□□□□ -0.24
SF3B1-204ENST00000414963 SSR2P43308 183 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms