RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 ELOVL6Q9H5J4 265 aa13.87□□□□□ -0.19
LIMS1-206ENST00000414829 SSU72Q9NP77 194 aaKnown RBP13.87□□□□□ -0.19
LIMS1-206ENST00000414829 SEMA4BQ9NPR2 832 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-206ENST00000414829 PSD3Q9NYI0 1048 aa13.87□□□□□ -0.19
LIMS1-206ENST00000414829 C19orf25Q9UFG5 118 aaPredicted RBP13.87□□□□□ -0.19
LIMS1-206ENST00000414829 TRPS1Q9UHF7 1281 aa13.87□□□□□ -0.19
LIMS1-206ENST00000414829 C3orf18Q9UK00 162 aa13.87□□□□□ -0.19
LIMS1-206ENST00000414829 PLLPQ9Y342 182 aa13.87□□□□□ -0.19
LIMS1-206ENST00000414829 ACTL7BQ9Y614 415 aa13.87□□□□□ -0.19
LIMS1-206ENST00000414829 SPACA6W5XKT8 324 aa13.87□□□□□ -0.19
LIMS1-206ENST00000414829 CACNA1BQ00975 2339 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 SGK494L7N484 410 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 ZZEF1O43149 2961 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 B3GALT2O43825 422 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 PRAMEF4O60810 478 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 RDH16O75452 317 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 ENO1P06733 434 aaKnown RBP13.86□□□□□ -0.19
LIMS1-206ENST00000414829 HEXBP07686 556 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 RNH1P13489 461 aaKnown RBP13.86□□□□□ -0.19
LIMS1-206ENST00000414829 PTX3P26022 381 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-206ENST00000414829 XCR1P46094 333 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 RAP1GDS1P52306 607 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 MTTPP55157 894 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 KLC1Q07866 573 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 TRAF3Q13114 568 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 CPSF6Q16630 551 aaKnown RBP eCLIP13.86□□□□□ -0.19
LIMS1-206ENST00000414829 DEFB109BQ30KR1 87 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 BEND6Q5SZJ8 279 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-206ENST00000414829 PRAMEF9Q5VWM5 478 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 LIPMQ5VYY2 423 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 GPRIN3Q6ZVF9 776 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 OR51Q1Q8NH59 317 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 HUS1BQ8NHY5 278 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 ZNF473Q8WTR7 871 aaKnown RBP13.86□□□□□ -0.19
LIMS1-206ENST00000414829 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-206ENST00000414829 METTL21AQ8WXB1 218 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 TBC1D20Q96BZ9 403 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 MS4A6EQ96DS6 147 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 MOCOSQ96EN8 888 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 CRELD1Q96HD1 420 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 SERINC2Q96SA4 455 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 MACROD1Q9BQ69 325 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 TBCDQ9BTW9 1192 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 MS4A8Q9BY19 250 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 SLC29A3Q9BZD2 475 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 SOX17Q9H6I2 414 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-206ENST00000414829 DMRT3Q9NQL9 472 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 NMRK1Q9NWW6 199 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 EMCNQ9ULC0 261 aa13.86□□□□□ -0.19
LIMS1-206ENST00000414829 ZNF490Q9ULM2 529 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-206ENST00000414829 MRPS33Q9Y291 106 aaKnown RBP13.86□□□□□ -0.19
LIMS1-206ENST00000414829 MRPS2Q9Y399 296 aaKnown RBP13.86□□□□□ -0.19
LIMS1-206ENST00000414829 SNRNP200O75643 2136 aaKnown RBP13.85□□□□□ -0.19
LIMS1-206ENST00000414829 BLACEA4D250 179 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 LRRC14BA6NHZ5 514 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 IDSB3KWA1 339 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 MKRN2OSH3BPM6 223 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 OR7A17O14581 309 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 CTIFO43310 598 aaKnown RBP13.85□□□□□ -0.19
LIMS1-206ENST00000414829 SEMA3DO95025 777 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 BMP10O95393 424 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 KRT6AP02538 564 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 KRT6BP04259 564 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 UMODP07911 640 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 ATXN8OSP0DMR3 200 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 SMIM10L1P0DMW3 83 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 ACPPP15309 386 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 HNRNPH1P31943 449 aaKnown RBP13.85□□□□□ -0.19
LIMS1-206ENST00000414829 KRT6CP48668 564 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 EMP2P54851 167 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 RAB8AP61006 207 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 BTN3A2P78410 334 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 HYAL2Q12891 473 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 CUL3Q13618 768 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 DDX39BQ13838 428 aaKnown RBP13.85□□□□□ -0.19
LIMS1-206ENST00000414829 ZRSR2Q15696 482 aaKnown RBP13.85□□□□□ -0.19
LIMS1-206ENST00000414829 TBR1Q16650 682 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 TUBB8Q3ZCM7 444 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 MINDY4Q4G0A6 757 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 KHDRBS2Q5VWX1 349 aaKnown RBP13.85□□□□□ -0.19
LIMS1-206ENST00000414829 PDSS2Q86YH6 399 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 ZC3H7AQ8IWR0 971 aaKnown RBP13.85□□□□□ -0.19
LIMS1-206ENST00000414829 ARMC2Q8NEN0 867 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 OR52B6Q8NGF0 335 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 TTC9Q92623 222 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 SMIM10Q96HG1 83 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 NSUN5Q96P11 429 aaKnown RBP13.85□□□□□ -0.19
LIMS1-206ENST00000414829 ZIM3Q96PE6 472 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 SERPINI1Q99574 410 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 CENPHQ9H3R5 247 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 ZBTB26Q9HCK0 441 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 ACSS2Q9NR19 701 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 HCN3Q9P1Z3 774 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 MKL2Q9ULH7 1088 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 KCNMB2Q9Y691 235 aa13.85□□□□□ -0.19
LIMS1-206ENST00000414829 G3V2L1 256 aa13.84□□□□□ -0.19
LIMS1-206ENST00000414829 AGPSO00116 658 aa13.84□□□□□ -0.19
LIMS1-206ENST00000414829 ATXN7O15265 892 aaPredicted RBP13.84□□□□□ -0.19
LIMS1-206ENST00000414829 TM9SF1O15321 606 aa13.84□□□□□ -0.19
LIMS1-206ENST00000414829 CNOT3O75175 753 aaKnown RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms