RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 PEX11GQ96HA9 241 aa13.91□□□□□ -0.18
CHD1-202ENST00000414220 TRIM55Q9BYV6 548 aa13.91□□□□□ -0.18
CHD1-202ENST00000414220 ZNF71Q9NQZ8 489 aaPredicted RBP13.91□□□□□ -0.18
CHD1-202ENST00000414220 RIC8BQ9NVN3 520 aa13.91□□□□□ -0.18
CHD1-202ENST00000414220 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.91□□□□□ -0.18
CHD1-202ENST00000414220 FBXL4Q9UKA2 621 aa13.91□□□□□ -0.18
CHD1-202ENST00000414220 GRID1Q9ULK0 1009 aa13.91□□□□□ -0.18
CHD1-202ENST00000414220 ZNF490Q9ULM2 529 aaPredicted RBP13.91□□□□□ -0.18
CHD1-202ENST00000414220 MRPS33Q9Y291 106 aaKnown RBP13.91□□□□□ -0.18
CHD1-202ENST00000414220 STK38LQ9Y2H1 464 aa13.91□□□□□ -0.18
CHD1-202ENST00000414220 V9GYY5 206 aaPredicted RBP13.91□□□□□ -0.18
CHD1-202ENST00000414220 SPACA6W5XKT8 324 aa13.91□□□□□ -0.18
CHD1-202ENST00000414220 ZNF860A6NHJ4 632 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 B8ZZF3 427 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 GOLGA8RI6L899 631 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 E2F3O00716 465 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 SOCS6O14544 535 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 FFAR3O14843 346 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 GPR42O15529 346 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 CHST10O43529 356 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 DNAJB5O75953 348 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 SIX3O95343 332 aaPredicted RBP13.9□□□□□ -0.18
CHD1-202ENST00000414220 UQCRHP07919 91 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 FHP07954 510 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 NUDT17P0C025 328 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 SMIM10L1P0DMW3 83 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 RNH1P13489 461 aaKnown RBP13.9□□□□□ -0.18
CHD1-202ENST00000414220 EPORP19235 508 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 ITGA3P26006 1051 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 PIK3CBP42338 1070 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 SOX8P57073 446 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 FOXL2P58012 376 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 NAA20P61599 178 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 CCDC153Q494R4 210 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 TTC19Q6DKK2 380 aaPredicted RBP13.9□□□□□ -0.18
CHD1-202ENST00000414220 KIRREL2Q6UWL6 708 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 LAPTM4BQ86VI4 370 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 PDSS2Q86YH6 399 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 LAS2Q8IYD9 372 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 C7orf57Q8NEG2 295 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 OR7G3Q8NG95 312 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 AENQ8WTP8 325 aaKnown RBP13.9□□□□□ -0.18
CHD1-202ENST00000414220 MS4A6EQ96DS6 147 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 SMIM10Q96HG1 83 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 KCNC2Q96PR1 638 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 SERINC2Q96SA4 455 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 PARD6BQ9BYG5 372 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 SEMA4CQ9C0C4 833 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 IQCGQ9H095 443 aaKnown RBP13.9□□□□□ -0.18
CHD1-202ENST00000414220 NOL11Q9H8H0 719 aaKnown RBP13.9□□□□□ -0.18
CHD1-202ENST00000414220 TMEM216Q9P0N5 145 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 C5AR2Q9P296 337 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 MID2Q9UJV3 735 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 ASB1Q9Y576 335 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 ITPR1Q14643 2758 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 ZFHX4Q86UP3 3567 aa13.9□□□□□ -0.18
CHD1-202ENST00000414220 MDC1Q14676 2089 aaKnown RBP13.89□□□□□ -0.19
CHD1-202ENST00000414220 SYNDIG1LA6NDD5 238 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 H0YIV9 168 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 CLDN4O14493 209 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 COPEO14579 308 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 DPM1O60762 260 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 CEACAM4O75871 244 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 OTCP00480 354 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 PRB1P04280 392 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 ATP5F1P24539 256 aaPredicted RBP13.89□□□□□ -0.19
CHD1-202ENST00000414220 PTX3P26022 381 aaPredicted RBP13.89□□□□□ -0.19
CHD1-202ENST00000414220 RAP1GDS1P52306 607 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 PLA2G16P53816 162 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 MTTPP55157 894 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 ACTN3Q08043 901 aaPredicted RBP13.89□□□□□ -0.19
CHD1-202ENST00000414220 HYAL2Q12891 473 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 KLRB1Q12918 225 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 DDX39BQ13838 428 aaKnown RBP13.89□□□□□ -0.19
CHD1-202ENST00000414220 MYBPC3Q14896 1274 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 AP5B1Q2VPB7 878 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 FAAH2Q6GMR7 532 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 MILR1Q7Z6M3 343 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 ZNF605Q86T29 641 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 KBTBD2Q8IY47 623 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 ZNF843Q8N446 348 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 CCDC63Q8NA47 563 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 PLPP5Q8NEB5 264 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 FDCSPQ8NFU4 85 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 OR11G2Q8NGC1 345 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 ZNF473Q8WTR7 871 aaKnown RBP13.89□□□□□ -0.19
CHD1-202ENST00000414220 TBCDQ9BTW9 1192 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 TUBB6Q9BUF5 446 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 NTMT1Q9BV86 223 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 KLHL31Q9H511 634 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 ANAPC2Q9UJX6 822 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 TP53TG5Q9Y2B4 290 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 TSC22D4Q9Y3Q8 395 aa13.89□□□□□ -0.19
CHD1-202ENST00000414220 CCDC151A5D8V7 595 aa13.88□□□□□ -0.19
CHD1-202ENST00000414220 PRMT3O60678 531 aa13.88□□□□□ -0.19
CHD1-202ENST00000414220 PRAMEF4O60810 478 aa13.88□□□□□ -0.19
CHD1-202ENST00000414220 B4GALT2O60909 372 aa13.88□□□□□ -0.19
CHD1-202ENST00000414220 ERLIN1O75477 346 aa13.88□□□□□ -0.19
CHD1-202ENST00000414220 SUPT7LO94864 414 aa13.88□□□□□ -0.19
CHD1-202ENST00000414220 CD22P20273 847 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms