RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ADAM19Q9H013 955 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 KNTC1P50748 2209 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 PNPP00491 289 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 ACTR1BP42025 376 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 KCNC1P48547 511 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 DSTNP60981 165 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 RPS3AP61247 264 aaKnown RBP12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 NTRK3Q16288 839 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 ARL13AQ5H913 290 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 KIAA1614Q5VZ46 1190 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 NAPRTQ6XQN6 538 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 SVBPQ8N300 66 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF439Q8NDP4 499 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 OR56A1Q8NGH5 318 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 TBC1D16Q8TBP0 767 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 MYLIPQ8WY64 445 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 TAAR8Q969N4 342 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 TEX10Q9NXF1 929 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 DNAJB4Q9UDY4 337 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 RAB19A4D1S5 217 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 ARP10275 920 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 GP1BBP13224 206 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 CTC1Q2NKJ3 1217 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 SMYD5Q6GMV2 418 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 HYLS1Q96M11 299 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 FTHL17Q9BXU8 183 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 LRRC4CQ9HCJ2 640 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 DDX4Q9NQI0 724 aaKnown RBP12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 POT1Q9NUX5 634 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 FASLGP48023 281 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 PTPRRQ15256 657 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF423Q2M1K9 1284 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 PKP4Q99569 1192 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 AQP12BA6NM10 295 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 NDUFS4O43181 175 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 GALK2Q01415 458 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF169Q14929 603 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 PEA15Q15121 130 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 ATPAF1Q5TC12 328 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 PAOXQ6QHF9 649 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 OR5H2Q8NGV7 314 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 ISOC1Q96CN7 298 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 DEFB129Q9H1M3 183 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 TSPAN10Q9H1Z9 355 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 METTL7AQ9H8H3 244 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 IL20RAQ9UHF4 553 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 NPHP4O75161 1426 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 ADAM10O14672 748 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 ANKRD28O15084 1053 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 THBS2P35442 1172 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 OC90Q02509 493 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 CAPSQ13938 189 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 HACD2Q6Y1H2 254 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 SPATC1Q76KD6 591 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 CMIPQ8IY22 773 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF558Q96NG5 402 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 LRP5LA4QPB2 252 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 MGST1P10620 155 aaKnown RBP12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 CX3CR1P49238 355 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 BLKP51451 505 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 POU4F2Q12837 409 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 OR6K2Q8NGY2 324 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 OR14C36Q8NHC7 312 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 BTN2A3PQ96KV6 586 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 TIGARQ9NQ88 270 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 POLE4Q9NR33 117 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 FZD4Q9ULV1 537 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 RUNX2Q13950 521 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 LY6KQ17RY6 165 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 TLDC1Q6P9B6 456 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 NAT16Q8N8M0 369 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 LRRN4CLQ8ND94 238 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 DENND1AQ8TEH3 1009 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 TM9SF4Q92544 642 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 HS6ST2Q96MM7 605 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 HINT2Q9BX68 163 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 IRS2Q9Y4H2 1338 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF84P51523 738 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF33AQ06730 810 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 ARL16Q0P5N6 197 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 TIGD3Q6B0B8 471 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 SLC2A7Q6PXP3 512 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF781Q8N8C0 355 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 LRRC57Q8N9N7 239 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 LENG8Q96PV6 779 aaPredicted RBP12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 UQCC2Q9BRT2 126 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 PAPOLGQ9BWT3 736 aaKnown RBP12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 DPEP2Q9H4A9 486 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 EXTL2Q9UBQ6 330 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 POMPQ9Y244 141 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 SAP18O00422 153 aaKnown RBP12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 PCDH7O60245 1069 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 LCMT2O60294 686 aaKnown RBP12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 PRNPP04156 253 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 ACTC1P68032 377 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 ACTA1P68133 377 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 SLC25A52Q3SY17 297 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 KHDC1Q4VXA5 237 aaKnown RBP12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 C16orf78Q8WTQ4 265 aa12.92□□□□□ -0.34
CCDC88A-204ENST00000413716 SDSLQ96GA7 329 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms