RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 HNF4AP41235 474 aa13.84□□□□□ -0.19
CBX3-203ENST00000409747 RAB8AP61006 207 aa13.84□□□□□ -0.19
CBX3-203ENST00000409747 ZNF460Q14592 562 aa13.84□□□□□ -0.19
CBX3-203ENST00000409747 FASTKD3Q14CZ7 662 aaKnown RBP13.84□□□□□ -0.19
CBX3-203ENST00000409747 RPTNQ6XPR3 784 aa13.84□□□□□ -0.19
CBX3-203ENST00000409747 KLHDC8AQ8IYD2 350 aa13.84□□□□□ -0.19
CBX3-203ENST00000409747 CYP4X1Q8N118 509 aa13.84□□□□□ -0.19
CBX3-203ENST00000409747 TCAIMQ8N3R3 496 aa13.84□□□□□ -0.19
CBX3-203ENST00000409747 TSPAN17Q96FV3 270 aa13.84□□□□□ -0.19
CBX3-203ENST00000409747 FAR2Q96K12 515 aa13.84□□□□□ -0.19
CBX3-203ENST00000409747 SIGLEC12Q96PQ1 595 aa13.84□□□□□ -0.19
CBX3-203ENST00000409747 ANKRD10Q9NXR5 420 aa13.84□□□□□ -0.19
CBX3-203ENST00000409747 SAGE2PA6NJ88 616 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 TP73O15350 636 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 CA7P43166 264 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 RPL21P46778 160 aaKnown RBP13.83□□□□□ -0.2
CBX3-203ENST00000409747 PMP22Q01453 160 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 POU4F1Q01851 419 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 CALCOCO2Q13137 446 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 TSNQ15631 228 aaKnown RBP13.83□□□□□ -0.2
CBX3-203ENST00000409747 KRTCAP3Q53RY4 240 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 TOR1AIP1Q5JTV8 583 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 RPS19BP1Q86WX3 136 aaKnown RBP13.83□□□□□ -0.2
CBX3-203ENST00000409747 TICAM1Q8IUC6 712 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 KRT78Q8N1N4 520 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 CREB3L4Q8TEY5 395 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 THAP3Q8WTV1 239 aaPredicted RBP13.83□□□□□ -0.2
CBX3-203ENST00000409747 PYROXD1Q8WU10 500 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 GAL3ST3Q96A11 431 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 MAGED4Q96JG8 741 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 KRT12Q99456 494 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 NPAS2Q99743 824 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 PITHD1Q9GZP4 211 aaPredicted RBP13.83□□□□□ -0.2
CBX3-203ENST00000409747 DERL2Q9GZP9 239 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 RUBCNLQ9H714 662 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 CNOT10Q9H9A5 744 aaKnown RBP13.83□□□□□ -0.2
CBX3-203ENST00000409747 KLHL1Q9NR64 748 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 LRFN1Q9P244 771 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 MMACHCQ9Y4U1 282 aa13.83□□□□□ -0.2
CBX3-203ENST00000409747 TCRBV16S1A1N1A0A5B0 115 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 ASPDHA6ND91 283 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 SYNDIG1LA6NDD5 238 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 PRSS44E7EML9 344 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 CCL21O00585 134 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 B3GALT4O96024 378 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 SMIM10L1P0DMW3 83 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 C1GALT1C1LP0DN25 315 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 SLC6A12P48065 614 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 ALDH6A1Q02252 535 aaKnown RBP13.82□□□□□ -0.2
CBX3-203ENST00000409747 HYAL2Q12891 473 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 ART3Q13508 389 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 SPINK14Q6IE38 97 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 TMIGD1Q6UXZ0 262 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 CEP97Q8IW35 865 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.82□□□□□ -0.2
CBX3-203ENST00000409747 ADAMTS18Q8TE60 1221 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 ANKRD49Q8WVL7 239 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 RHBDF1Q96CC6 855 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 SMIM10Q96HG1 83 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 GPR137Q96N19 417 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 MCMBPQ9BTE3 642 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 CDCP1Q9H5V8 836 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 GPRC5BQ9NZH0 403 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 SNX24Q9Y343 169 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 KLF2Q9Y5W3 355 aaPredicted RBP13.82□□□□□ -0.2
CBX3-203ENST00000409747 MYO9AB2RTY4 2548 aa13.82□□□□□ -0.2
CBX3-203ENST00000409747 IGKV3D-11A0A0A0MRZ8 115 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 FAM227AF5H4B4 570 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 FCHO1O14526 889 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 EIF3HO15372 352 aaKnown RBP eCLIP13.81□□□□□ -0.2
CBX3-203ENST00000409747 SLC19A2O60779 497 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 DNAJB6O75190 326 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 SP1P08047 785 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 MAOAP21397 527 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 CYB561P49447 251 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 SLBPQ14493 270 aaKnown RBP eCLIP13.81□□□□□ -0.2
CBX3-203ENST00000409747 TERF2Q15554 542 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 TGFBIQ15582 683 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 CDKL4Q5MAI5 379 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 SLC25A25Q6KCM7 469 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 SLCO4C1Q6ZQN7 724 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 MAATS1Q7Z4T9 603 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 CA13Q8N1Q1 262 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 ZNF808Q8N4W9 903 aaPredicted RBP13.81□□□□□ -0.2
CBX3-203ENST00000409747 CCDC120Q96HB5 630 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 FRMD6Q96NE9 622 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 NPLQ9BXD5 320 aaPredicted RBP13.81□□□□□ -0.2
CBX3-203ENST00000409747 RHBGQ9H310 441 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 EHD1Q9H4M9 534 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 KLHL31Q9H511 634 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 WWOXQ9NZC7 414 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 WHRNQ9P202 907 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 FAM187AA6NFU0 413 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 ENO4A6NNW6 628 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 MAN1A2O60476 641 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 SLC25A12O75746 678 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 NEURL1O76050 574 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 TPP2P29144 1249 aaPredicted RBP13.81□□□□□ -0.2
CBX3-203ENST00000409747 ATP6V0D1P61421 351 aa13.81□□□□□ -0.2
CBX3-203ENST00000409747 BTN3A2P78410 334 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms