RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 SCN3AQ9NY46 2000 aa18.78■□□□□ 0.6
PDLIM2-207ENST00000409417 ZNF860A6NHJ4 632 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 C4orf51C9J302 202 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 ERI3O43414 337 aaKnown RBP18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 BMP10O95393 424 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 OTCP00480 354 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 IL10P22301 178 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 ARL1P40616 181 aaPredicted RBP18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 XCR1P46094 333 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 CDH13P55290 713 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 UNC50Q53HI1 259 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 PCSK4Q6UW60 755 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 RPS27LQ71UM5 84 aaKnown RBP18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 PPP1R32Q7Z5V6 425 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 LAPTM4BQ86VI4 370 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 OR2L5Q8NG80 312 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 HUS1BQ8NHY5 278 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 L3HYPDHQ96EM0 354 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 FAR2Q96K12 515 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 CDK15Q96Q40 435 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 CRB3Q9BUF7 120 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 IQCGQ9H095 443 aaKnown RBP18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 SENP1Q9P0U3 644 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 TLN1Q9Y490 2541 aaKnown RBP18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 SPTA1P02549 2419 aa18.77■□□□□ 0.6
PDLIM2-207ENST00000409417 IDSB3KWA1 339 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 RGS16O15492 202 aaPredicted RBP18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 SUPT7LO94864 414 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 B3GALT4O96024 378 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 IGHEP01854 428 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 CLCQ05315 142 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 TGM3Q08188 693 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 ATP1A4Q13733 1029 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 ZRSR2Q15696 482 aaKnown RBP18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 GGTA1PQ4G0N0 100 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 TMEM35AQ53FP2 167 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 LRIG3Q6UXM1 1119 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 CHSY3Q70JA7 882 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 MILR1Q7Z6M3 343 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 CROCCP2Q86T23 111 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 APLFQ8IW19 511 aaPredicted RBP18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 LSM14AQ8ND56 463 aaKnown RBP18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 OR5T3Q8NGG3 340 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 MAGEB10Q96LZ2 347 aaPredicted RBP18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 ZIM3Q96PE6 472 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 SMC6Q96SB8 1091 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 ARHGAP9Q9BRR9 750 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 MS4A8Q9BY19 250 aa18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 C12orf65Q9H3J6 166 aaKnown RBP18.77■□□□□ 0.59
PDLIM2-207ENST00000409417 A0A088AWK7 358 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 PEX12O00623 359 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 PPP6CO00743 305 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 ATXN7O15265 892 aaPredicted RBP18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 CHST10O43529 356 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 CPA3P15088 417 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 ZNF10P21506 573 aaPredicted RBP18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 PLA2G16P53816 162 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 POLE2P56282 527 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 BTN3A2P78410 334 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 RBBP7Q16576 425 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 CEP85LQ5SZL2 805 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 C10orf62Q5T681 223 aaPredicted RBP18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 TRIM40Q6P9F5 258 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 ABHD17CQ6PCB6 329 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 TMEM102Q8N9M5 508 aaPredicted RBP18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 CCDC63Q8NA47 563 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 SRFBP1Q8NEF9 429 aaKnown RBP18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 TRPC4APQ8TEL6 797 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 CMTM7Q96FZ5 175 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 OR1F2PQ96R84 312 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 F2RL3Q96RI0 385 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 MTERF1Q99551 399 aaKnown RBP18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 PRM3Q9NNZ6 103 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 ACSS2Q9NR19 701 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 OXSMQ9NWU1 459 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 P4HTMQ9NXG6 502 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 MID2Q9UJV3 735 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 HS3ST3B1Q9Y662 390 aa18.76■□□□□ 0.59
PDLIM2-207ENST00000409417 A0A1B0GTL3 188 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 CTIFO43310 598 aaKnown RBP18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 DNAJB6O75190 326 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 JRKO75564 520 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 MLYCDO95822 493 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 TGFB1P01137 390 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 EMP2P54851 167 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 RRADP55042 308 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 DNAJB13P59910 316 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 NAA20P61599 178 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 PHEXP78562 749 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 DDX39BQ13838 428 aaKnown RBP18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 KHDRBS2Q5VWX1 349 aaKnown RBP18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 FRG2Q64ET8 278 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 KIRREL2Q6UWL6 708 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 MED25Q71SY5 747 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 SHISA5Q8N114 240 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 OR4F6Q8NGB9 312 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 WDR20Q8TBZ3 569 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 QRFPRQ96P65 431 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 KCNC2Q96PR1 638 aa18.75■□□□□ 0.59
PDLIM2-207ENST00000409417 FRG2BQ96QU4 278 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms