RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 LAMP1P11279 417 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 HOXD8P13378 290 aaPredicted RBP11.51□□□□□ -0.57
HMGB1-206ENST00000405805 FPR1P21462 350 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 KELP23276 732 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 MAN2A2P49641 1150 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 EPHB3P54753 998 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 P2RX3P56373 397 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 RPS26P62854 115 aaKnown RBP11.51□□□□□ -0.57
HMGB1-206ENST00000405805 TAGLNQ01995 201 aaKnown RBP11.51□□□□□ -0.57
HMGB1-206ENST00000405805 TIMM50Q3ZCQ8 353 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 CARD16Q5EG05 197 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.51□□□□□ -0.57
HMGB1-206ENST00000405805 OR8J3Q8NGG0 315 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 TUBA1CQ9BQE3 449 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 ITPAQ9BY32 194 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 TVP23BQ9NYZ1 205 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 PPIEQ9UNP9 301 aaKnown RBP11.51□□□□□ -0.57
HMGB1-206ENST00000405805 ZNF623O75123 536 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 IFNA7P01567 189 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 CYBAP13498 195 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 F8A1P23610 371 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 HNF1BP35680 557 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 RPL34P49207 117 aaKnown RBP11.51□□□□□ -0.57
HMGB1-206ENST00000405805 SLC11A1P49279 550 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 ERVFC1P60507 584 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 HSF2Q03933 536 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 NPRL3Q12980 569 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 IL18Q14116 193 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 FAM205BPQ63HN1 556 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 LRRC66Q68CR7 880 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 NOXRED1Q6NXP6 359 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 SERPINA13PQ6UXR4 307 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 DLEU7Q6UYE1 221 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 COMMD7Q86VX2 200 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 GHDCQ8N2G8 530 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 SLC37A3Q8NCC5 494 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 HJURPQ8NCD3 748 aaPredicted RBP11.51□□□□□ -0.57
HMGB1-206ENST00000405805 TSPEARQ8WU66 669 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 PPCDCQ96CD2 204 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 FRMD6Q96NE9 622 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 DEFB118Q96PH6 123 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 YIPF4Q9BSR8 244 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 ABCB8Q9NUT2 735 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 COPZ2Q9P299 210 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 ENPP5Q9UJA9 477 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 ADAM12O43184 909 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 PPM1BO75688 479 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 DHFRP00374 187 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 LRG1P02750 347 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 MLLT10P55197 1068 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 HSPB3Q12988 150 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 SMCO1Q147U7 214 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 BHLHA9Q7RTU4 235 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 TMCO2Q7Z6W1 182 aaPredicted RBP11.51□□□□□ -0.57
HMGB1-206ENST00000405805 B3GNT8Q7Z7M8 397 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 APCDD1Q8J025 514 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 RAB8BQ92930 207 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 COL26A1Q96A83 441 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 CSF3RQ99062 836 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 BCL7BQ9BQE9 202 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 RNF208Q9H0X6 261 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 IL1RAPQ9NPH3 570 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 MS4A12Q9NXJ0 267 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 VPS29Q9UBQ0 182 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 SARDHQ9UL12 918 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 CFAP20Q9Y6A4 193 aaKnown RBP11.51□□□□□ -0.57
HMGB1-206ENST00000405805 KDELR3O43731 214 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 PRPS2P11908 318 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 SNRPD1P62314 119 aaKnown RBP11.5□□□□□ -0.57
HMGB1-206ENST00000405805 VLDLRP98155 873 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 ZNF45Q02386 682 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 GRSF1Q12849 480 aaKnown RBP eCLIP11.5□□□□□ -0.57
HMGB1-206ENST00000405805 VMACQ2NL98 169 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 USP41Q3LFD5 358 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 HSD17B12Q53GQ0 312 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 NDUFAF5Q5TEU4 345 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 OR9Q2Q8NGE9 314 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 NFKBIDQ8NI38 313 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 GTPBP2Q9BX10 602 aaKnown RBP11.5□□□□□ -0.57
HMGB1-206ENST00000405805 IL26Q9NPH9 171 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 COMMD3Q9UBI1 195 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 FABP12A6NFH5 140 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 NEDD8-MDP1E9PL57 170 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 DLGAP1O14490 977 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 OR7A17O14581 309 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 TLL1O43897 1013 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 RD3LP0DJH9 198 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 ETFAP13804 333 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 MYL9P24844 172 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 ZNF140P52738 457 aaPredicted RBP11.5□□□□□ -0.57
HMGB1-206ENST00000405805 DCDC1P59894 354 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 ELAVL2Q12926 359 aaKnown RBP11.5□□□□□ -0.57
HMGB1-206ENST00000405805 CLLU1OSQ5K130 101 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 Q6ZVL8 140 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 MEX3DQ86XN8 651 aaKnown RBP11.5□□□□□ -0.57
HMGB1-206ENST00000405805 CFAP206Q8IYR0 622 aa11.5□□□□□ -0.57
HMGB1-206ENST00000405805 ZNF548Q8NEK5 533 aaPredicted RBP11.5□□□□□ -0.57
HMGB1-206ENST00000405805 CLP1Q92989 425 aaKnown RBP11.5□□□□□ -0.57
HMGB1-206ENST00000405805 EXOSC8Q96B26 276 aaKnown RBP11.5□□□□□ -0.57
HMGB1-206ENST00000405805 POLR2J2Q9GZM3 115 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms