RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 SAGE2PA6NJ88 616 aa20.14■□□□□ 0.82
CTCF-202ENST00000401394 OPRD1P41143 372 aa20.14■□□□□ 0.82
CTCF-202ENST00000401394 SLC6A12P48065 614 aa20.14■□□□□ 0.82
CTCF-202ENST00000401394 MVDP53602 400 aa20.14■□□□□ 0.82
CTCF-202ENST00000401394 CAV3P56539 151 aa20.14■□□□□ 0.82
CTCF-202ENST00000401394 ZNF45Q02386 682 aa20.14■□□□□ 0.82
CTCF-202ENST00000401394 PRKCDQ05655 676 aa20.14■□□□□ 0.82
CTCF-202ENST00000401394 MPPE1Q53F39 396 aa20.14■□□□□ 0.82
CTCF-202ENST00000401394 EEF1AKMT2Q5JPI9 291 aaKnown RBP20.14■□□□□ 0.82
CTCF-202ENST00000401394 AQP11Q8NBQ7 271 aa20.14■□□□□ 0.82
CTCF-202ENST00000401394 CHAC2Q8WUX2 184 aa20.14■□□□□ 0.82
CTCF-202ENST00000401394 COL21A1Q96P44 957 aa20.14■□□□□ 0.82
CTCF-202ENST00000401394 EPYCQ99645 322 aa20.14■□□□□ 0.82
CTCF-202ENST00000401394 DNAJC11Q9NVH1 559 aa20.14■□□□□ 0.82
CTCF-202ENST00000401394 NUFIP1Q9UHK0 495 aaKnown RBP20.14■□□□□ 0.82
CTCF-202ENST00000401394 SH2B3Q9UQQ2 575 aa20.14■□□□□ 0.82
CTCF-202ENST00000401394 OR6C75A6NL08 312 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 BDKRB1P46663 353 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 SELENOWP63302 87 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 ZNF79Q15937 498 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 TRIM60Q495X7 471 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 C17orf99Q6UX52 265 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 LILRB4Q8NHJ6 448 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 AUTS2Q8WXX7 1259 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 TBC1D20Q96BZ9 403 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 COQ8BQ96D53 544 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 ZIC5Q96T25 663 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 RDH14Q9HBH5 336 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 RANGRFQ9HD47 186 aaPredicted RBP20.14■□□□□ 0.81
CTCF-202ENST00000401394 FKBP14Q9NWM8 211 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 ITGB1BP2Q9UKP3 347 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 RAB23Q9ULC3 237 aa20.14■□□□□ 0.81
CTCF-202ENST00000401394 TPST2O60704 377 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 ENTPD6O75354 484 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 GJA1P17302 382 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 FLT3LGP49771 235 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 DUSP7Q16829 419 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 TBRG1Q3YBR2 411 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 TRAF7Q6Q0C0 670 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 C2orf73Q8N5S3 287 aaPredicted RBP20.13■□□□□ 0.81
CTCF-202ENST00000401394 TP53I13Q8NBR0 393 aaPredicted RBP20.13■□□□□ 0.81
CTCF-202ENST00000401394 SLC30A2Q9BRI3 323 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 TMEM246Q9BRR3 403 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 ABCB8Q9NUT2 735 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 TAS2R9Q9NYW1 312 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 WBP11Q9Y2W2 641 aaKnown RBP20.13■□□□□ 0.81
CTCF-202ENST00000401394 CKAP5Q14008 2032 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 NSG1P42857 185 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 TAF12Q16514 161 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 RNF130Q86XS8 419 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 RBM45Q8IUH3 476 aaKnown RBP20.13■□□□□ 0.81
CTCF-202ENST00000401394 UBQLNLQ8IYU4 475 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 DBF4BQ8NFT6 615 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 KBTBD8Q8NFY9 601 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 ASB15Q8WXK1 588 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 ASPNQ9BXN1 380 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 SLC12A9Q9BXP2 914 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 SGK2Q9HBY8 427 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 SMU1Q2TAY7 513 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 CST9Q5W186 159 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 PAMR1Q6UXH9 720 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 ELMOD1Q8N336 334 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 L3MBTL4Q8NA19 623 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 OR4C15Q8NGM1 316 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 ADAMTS19Q8TE59 1207 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 HHATLQ9HCP6 504 aa20.13■□□□□ 0.81
CTCF-202ENST00000401394 PLD2O14939 933 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 SCAMP2O15127 329 aaKnown RBP20.12■□□□□ 0.81
CTCF-202ENST00000401394 IDSP22304 550 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 CHMP24386 653 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 PBLDP30039 288 aaPredicted RBP20.12■□□□□ 0.81
CTCF-202ENST00000401394 MPEG1Q2M385 716 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 PTCHD4Q6ZW05 846 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 TMCO2Q7Z6W1 182 aaPredicted RBP20.12■□□□□ 0.81
CTCF-202ENST00000401394 IQCF1Q8N6M8 205 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 OPALINQ96PE5 141 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 KLF16Q9BXK1 252 aaPredicted RBP20.12■□□□□ 0.81
CTCF-202ENST00000401394 A0A1W2PQ09 198 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 TMEM189-UBE2V1I3L0A0 370 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 RPS13P62277 151 aaKnown RBP20.12■□□□□ 0.81
CTCF-202ENST00000401394 CYP4F8P98187 520 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 CD83Q01151 205 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 MICAQ29983 383 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 SLC34A3Q8N130 599 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 ACER3Q9NUN7 267 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 MALT1Q9UDY8 824 aa20.12■□□□□ 0.81
CTCF-202ENST00000401394 TRBV4-1A0A0J9YWV2 114 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 IGHA2P01877 340 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 JUPP14923 745 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 PTGER1P34995 402 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 CRHR2Q13324 411 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 NPAS3Q8IXF0 933 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 VPS35Q96QK1 796 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 AP3M1Q9Y2T2 418 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 PEX16Q9Y5Y5 336 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 TGFB1P01137 390 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 APOA1P02647 267 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 FKBP1BP68106 108 aa20.11■□□□□ 0.81
CTCF-202ENST00000401394 SRSF11Q05519 484 aaKnown RBP20.11■□□□□ 0.81
CTCF-202ENST00000401394 SLC5A12Q1EHB4 618 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms