RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PILRAQ9UKJ1 303 aa13.55□□□□□ -0.24
SKA1-202ENST00000398452 GOLGA4Q13439 2230 aaKnown RBP13.55□□□□□ -0.24
SKA1-202ENST00000398452 LRIT2A6NDA9 550 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 CCT8L1PA6NM43 557 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 TMX2-CTNND1H3BSU7 103 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 PSMD12O00232 456 aaPredicted RBP13.54□□□□□ -0.24
SKA1-202ENST00000398452 PCDH7O60245 1069 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 NRP2O60462 931 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 RFPL3O75679 317 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 ANXA4P09525 319 aaPredicted RBP13.54□□□□□ -0.24
SKA1-202ENST00000398452 ANKRD34CP0C6C1 535 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 CDK4P11802 303 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 TIA1P31483 386 aaKnown RBP eCLIP13.54□□□□□ -0.24
SKA1-202ENST00000398452 CSTF2P33240 577 aaKnown RBP eCLIP13.54□□□□□ -0.24
SKA1-202ENST00000398452 TSFMP43897 325 aaKnown RBP13.54□□□□□ -0.24
SKA1-202ENST00000398452 GSTM5P46439 218 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 PLA2G16P53816 162 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 ZIC1Q15915 447 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 DEFB110Q30KQ9 67 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 RFTN2Q52LD8 501 aaPredicted RBP13.54□□□□□ -0.24
SKA1-202ENST00000398452 CCNYL2Q5T2Q4 361 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 NOXRED1Q6NXP6 359 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 RBM44Q6ZP01 1051 aaKnown RBP13.54□□□□□ -0.24
SKA1-202ENST00000398452 VN1R5Q7Z5H4 357 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 METTL4Q8N3J2 472 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 LIX1Q8N485 282 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 DNAJC22Q8N4W6 341 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 ZCCHC10Q8TBK6 192 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 CHTF18Q8WVB6 975 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 CMTM5Q96DZ9 223 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 CCDC74BQ96LY2 380 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 DPY30Q9C005 99 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 AIG1Q9NVV5 245 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 ASIC5Q9NY37 505 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 TMEM9Q9P0T7 183 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 MCM8Q9UJA3 840 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 ADAM29Q9UKF5 820 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 CCL27Q9Y4X3 112 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 COPG1Q9Y678 874 aaKnown RBP13.54□□□□□ -0.24
SKA1-202ENST00000398452 SPACA6W5XKT8 324 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 LAMA1P25391 3075 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 PCNX2A6NKB5 2137 aa13.54□□□□□ -0.24
SKA1-202ENST00000398452 IGHV5-10-1A0A0J9YXX1 117 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 D6RAR5 112 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 PRAMEF10O60809 474 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 ETHE1O95571 254 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 STATHP02808 62 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 KLK1P06870 262 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 THRAP10827 490 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 NELFEP18615 380 aaKnown RBP13.53□□□□□ -0.24
SKA1-202ENST00000398452 RPL3P39023 403 aaKnown RBP13.53□□□□□ -0.24
SKA1-202ENST00000398452 ACADVLP49748 655 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 MAPK12P53778 367 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 CLNS1AP54105 237 aaKnown RBP13.53□□□□□ -0.24
SKA1-202ENST00000398452 ZNF763Q0D2J5 394 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 UBAP2LQ14157 1087 aaKnown RBP13.53□□□□□ -0.24
SKA1-202ENST00000398452 GRM7Q14831 915 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 HERC3Q15034 1050 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 FAM214AQ32MH5 1076 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 PDCD4Q53EL6 469 aaKnown RBP13.53□□□□□ -0.24
SKA1-202ENST00000398452 WASHC2DQ5SRD0 308 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 OR4C11Q6IEV9 310 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 FRMPD2BQ6IN97 320 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 COMMD6Q7Z4G1 85 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 VN1R4Q7Z5H5 301 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 CLNKQ7Z7G1 428 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 D2HGDHQ8N465 521 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 CPSF7Q8N684 471 aaKnown RBP13.53□□□□□ -0.24
SKA1-202ENST00000398452 KLHL6Q8WZ60 621 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 MS4A6EQ96DS6 147 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 SLC41A2Q96JW4 573 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 PRPF18Q99633 342 aaKnown RBP13.53□□□□□ -0.24
SKA1-202ENST00000398452 C17orf62Q9BQA9 187 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 EBPLQ9BY08 206 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 STRADBQ9C0K7 418 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 MYLK2Q9H1R3 596 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 ANKHQ9HCJ1 492 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 FAM60AQ9NP50 221 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 TMEM45AQ9NWC5 275 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 ZIM2Q9NZV7 527 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 SEMA5BQ9P283 1151 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 ARMCX1Q9P291 453 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 WBP11Q9Y2W2 641 aaKnown RBP13.53□□□□□ -0.24
SKA1-202ENST00000398452 PCDHGA1Q9Y5H4 931 aa13.53□□□□□ -0.24
SKA1-202ENST00000398452 LOC105369274A0A096LPK9 316 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 LOC102723532A0A0G2JNH3 316 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 TMEM150CB9EJG8 249 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 NTN3O00634 580 aaPredicted RBP13.52□□□□□ -0.25
SKA1-202ENST00000398452 SLC22A3O75751 556 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 OR2B3O76000 313 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 ALDOCP09972 364 aaKnown RBP13.52□□□□□ -0.25
SKA1-202ENST00000398452 G6PDP11413 515 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 BCKDHAP12694 445 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 ALOX12P18054 663 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 HPCAL1P37235 193 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 MNAT1P51948 309 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 DIO3P55073 304 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 MTTPP55157 894 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 ITGA1P56199 1179 aa13.52□□□□□ -0.25
SKA1-202ENST00000398452 NME5P56597 212 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms