RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 HMGCLL1Q8TB92 370 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 RAB3IL1Q8TBN0 382 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 STT3BQ8TCJ2 826 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 MAGEC3Q8TD91 643 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 MCOLN3Q8TDD5 553 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 LRRC8CQ8TDW0 803 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 CKAP2Q8WWK9 683 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 TM9SF4Q92544 642 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 EXT2Q93063 718 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 ZUFSPQ96AP4 578 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 RAD51AP1Q96B01 352 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 NACC2Q96BF6 587 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 AGAP4Q96P64 663 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 LHPPQ9H008 270 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 MANSC1Q9H8J5 431 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 ZNF160Q9HCG1 818 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 INTS7Q9NVH2 962 aaKnown RBP9.81□□□□□ -0.84
NEDD8-202ENST00000396828 OXSMQ9NWU1 459 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 PLA2G3Q9NZ20 509 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 NUDT4Q9NZJ9 180 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 CD274Q9NZQ7 290 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 OSGIN2Q9Y236 505 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 OARD1Q9Y530 152 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 KLK4Q9Y5K2 254 aa9.81□□□□□ -0.84
NEDD8-202ENST00000396828 HEATR5BQ9P2D3 2071 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 TARM1B6A8C7 271 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 H0YGG7 62 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 DLX3O60479 287 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 SRPX2O60687 465 aaPredicted RBP9.8□□□□□ -0.84
NEDD8-202ENST00000396828 TRIM13O60858 407 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 WISP2O76076 250 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 MATN4O95460 622 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 F10P00742 488 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 CATP04040 527 aaKnown RBP9.8□□□□□ -0.84
NEDD8-202ENST00000396828 PRF1P14222 555 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 GRK2P25098 689 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 TSFMP43897 325 aaKnown RBP9.8□□□□□ -0.84
NEDD8-202ENST00000396828 ARF3P61204 181 aaPredicted RBP9.8□□□□□ -0.84
NEDD8-202ENST00000396828 GNGT1P63211 74 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 CDC16Q13042 620 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 ELOAQ14241 798 aaKnown RBP9.8□□□□□ -0.84
NEDD8-202ENST00000396828 TGFBIQ15582 683 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 HKDC1Q2TB90 917 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 YOD1Q5VVQ6 348 aaPredicted RBP9.8□□□□□ -0.84
NEDD8-202ENST00000396828 C1QL3Q5VWW1 255 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 LIPMQ5VYY2 423 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 TTC19Q6DKK2 380 aaPredicted RBP9.8□□□□□ -0.84
NEDD8-202ENST00000396828 SBSNQ6UWP8 590 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 RNF44Q7L0R7 432 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 C10orf107Q8IVU9 208 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 TTC29Q8NA56 475 aaPredicted RBP9.8□□□□□ -0.84
NEDD8-202ENST00000396828 FAR1Q8WVX9 515 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 ASB11Q8WXH4 323 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 TAAR6Q96RI8 345 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 ATOH8Q96SQ7 321 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 EGFL8Q99944 293 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 DPH7Q9BTV6 452 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 CRB3Q9BUF7 120 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 MECRQ9BV79 373 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 CCDC134Q9H6E4 229 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 PARVBQ9HBI1 364 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 ZNF304Q9HCX3 659 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 AGPAT4Q9NRZ5 378 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 SEMA3GQ9NS98 782 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 C3orf18Q9UK00 162 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 ADAMTS6Q9UKP5 1117 aa9.8□□□□□ -0.84
NEDD8-202ENST00000396828 IGLV3-12A0A075B6K2 115 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 OR2A25A4D2G3 310 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 NCF1BA6NI72 391 aaPredicted RBP9.79□□□□□ -0.84
NEDD8-202ENST00000396828 A8MT66 165 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 NCF1CA8MVU1 366 aaPredicted RBP9.79□□□□□ -0.84
NEDD8-202ENST00000396828 ARHGEF33A8MVX0 844 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 GFYI3L273 518 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 UBXN8O00124 270 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 KLF11O14901 512 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 KLHL41O60662 606 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 ZG16O60844 167 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 PSIP1O75475 530 aaKnown RBP9.79□□□□□ -0.84
NEDD8-202ENST00000396828 STATHP02808 62 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 SERPINE1P05121 402 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 ANXA5P08758 320 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 SBK3P0C264 359 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 PIM1P11309 404 aaPredicted RBP9.79□□□□□ -0.84
NEDD8-202ENST00000396828 COX6A1P12074 109 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 EDN3P14138 238 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 NCF1P14598 390 aaPredicted RBP9.79□□□□□ -0.84
NEDD8-202ENST00000396828 BGNP21810 368 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 LSP1P33241 339 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 KCNC1P48547 511 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 ALDH18A1P54886 795 aaKnown RBP9.79□□□□□ -0.84
NEDD8-202ENST00000396828 AP1S2P56377 157 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 DNAJB13P59910 316 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 NAA20P61599 178 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 CBX1P83916 185 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 CDKL1Q00532 357 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 EEF1A2Q05639 463 aaKnown RBP9.79□□□□□ -0.84
NEDD8-202ENST00000396828 MFAP5Q13361 173 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 CHI3L2Q15782 390 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 PPP1R3AQ16821 1122 aa9.79□□□□□ -0.84
NEDD8-202ENST00000396828 PFKFB4Q16877 469 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms