RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 RBBP9O75884 186 aa13.54□□□□□ -0.24
COL4A3-202ENST00000396578 IFNA4P05014 189 aa13.54□□□□□ -0.24
COL4A3-202ENST00000396578 GP1BBP13224 206 aa13.54□□□□□ -0.24
COL4A3-202ENST00000396578 ZNF41P51814 821 aaPredicted RBP13.54□□□□□ -0.24
COL4A3-202ENST00000396578 SP3Q02447 781 aa13.54□□□□□ -0.24
COL4A3-202ENST00000396578 CTC1Q2NKJ3 1217 aa13.54□□□□□ -0.24
COL4A3-202ENST00000396578 PIGGQ5H8A4 983 aa13.54□□□□□ -0.24
COL4A3-202ENST00000396578 LRIF1Q5T3J3 769 aa13.54□□□□□ -0.24
COL4A3-202ENST00000396578 ZNF611Q8N823 705 aa13.54□□□□□ -0.24
COL4A3-202ENST00000396578 ZUFSPQ96AP4 578 aa13.54□□□□□ -0.24
COL4A3-202ENST00000396578 Q9N2J8 555 aa13.54□□□□□ -0.24
COL4A3-202ENST00000396578 NANSQ9NR45 359 aa13.54□□□□□ -0.24
COL4A3-202ENST00000396578 KCNS2Q9ULS6 477 aa13.54□□□□□ -0.24
COL4A3-202ENST00000396578 EEF1E1O43324 174 aaKnown RBP13.53□□□□□ -0.24
COL4A3-202ENST00000396578 MAFKO60675 156 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 H2AFB2P0C5Z0 115 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 NRLP54845 237 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 DAOAP59103 153 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 STRA6Q9BX79 667 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 NPLQ9BXD5 320 aaPredicted RBP13.53□□□□□ -0.24
COL4A3-202ENST00000396578 FGFBP2Q9BYJ0 223 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 PCDHGA8Q9Y5G5 932 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 RIN1Q13671 783 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 PSD4Q8NDX1 1056 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 COL20A1Q9P218 1284 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 SLC17A6Q9P2U8 582 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 H0YAE9 185 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 CREBL2O60519 120 aaPredicted RBP13.53□□□□□ -0.24
COL4A3-202ENST00000396578 SIX3O95343 332 aaPredicted RBP13.53□□□□□ -0.24
COL4A3-202ENST00000396578 HLA-DQB2P05538 268 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 MSR1P21757 451 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 GSTM2P28161 218 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 ELK4P28324 431 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 LUMP51884 338 aaPredicted RBP13.53□□□□□ -0.24
COL4A3-202ENST00000396578 SNTA1Q13424 505 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 VARS2Q5ST30 1063 aaKnown RBP13.53□□□□□ -0.24
COL4A3-202ENST00000396578 GLT8D1Q68CQ7 371 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 KIF18BQ86Y91 864 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 NSMAFQ92636 917 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 NOCTQ9UK39 431 aaKnown RBP13.53□□□□□ -0.24
COL4A3-202ENST00000396578 NINQ8N4C6 2090 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 SLC16A8O95907 504 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 SLC26A5P58743 744 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 TCEANCQ8N8B7 351 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 VGLL2Q8N8G2 317 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 C4orf32Q8N8J7 132 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 RAD51DO75771 328 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 DNAJB5O75953 348 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 DIRAS1O95057 198 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 ZNF8P17098 575 aaPredicted RBP13.53□□□□□ -0.24
COL4A3-202ENST00000396578 CCNOP22674 350 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 MAGEA3P43357 314 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 IRF5Q13568 498 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 C12orf40Q86WS4 652 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 SCRN2Q96FV2 425 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 TMEM246Q9BRR3 403 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 NIFKQ9BYG3 293 aaKnown RBP13.53□□□□□ -0.24
COL4A3-202ENST00000396578 SLC38A8A6NNN8 435 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 TREHO43280 583 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 S1PR1P21453 382 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 AGXTP21549 392 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 CASP7P55210 303 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 ABHD18Q0P651 414 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 KRBOX4Q5JUW0 171 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 GDPD4Q6W3E5 623 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 THOC6Q86W42 341 aaKnown RBP13.53□□□□□ -0.24
COL4A3-202ENST00000396578 ZSWIM9Q86XI8 627 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 OR4K17Q8NGC6 315 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 SLC22A8Q8TCC7 542 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 IKZF4Q9H2S9 585 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 MTG2Q9H4K7 406 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 UNKLQ9H9P5 680 aaKnown RBP13.53□□□□□ -0.24
COL4A3-202ENST00000396578 ARL2P36404 184 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 GAD2Q05329 585 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 DUSP28Q4G0W2 176 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 GOLGA7Q7Z5G4 137 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 CCM2Q9BSQ5 444 aa13.53□□□□□ -0.24
COL4A3-202ENST00000396578 PAK1IP1Q9NWT1 392 aaPredicted RBP13.53□□□□□ -0.24
COL4A3-202ENST00000396578 CAPN3P20807 821 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 DPP6P42658 865 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 WDR4P57081 412 aaKnown RBP13.52□□□□□ -0.24
COL4A3-202ENST00000396578 FADDQ13158 208 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 SFT2D3Q587I9 215 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 LIPKQ5VXJ0 399 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 ZNF550Q7Z398 422 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 RASGRP3Q8IV61 690 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 UBQLNLQ8IYU4 475 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 WDR26Q9H7D7 661 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 MKS1Q9NXB0 559 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 SPEF2Q9C093 1822 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 OC90Q02509 493 aaPredicted RBP13.52□□□□□ -0.24
COL4A3-202ENST00000396578 TRAM2Q15035 370 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 AMZ1Q400G9 498 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 TMEM236Q5W0B7 351 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 BEST3Q8N1M1 668 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 SULT4A1Q9BR01 284 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 LDAHQ9H6V9 325 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 PCDHA2Q9Y5H9 948 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 FER1L4A9Z1Z3 1794 aa13.52□□□□□ -0.24
COL4A3-202ENST00000396578 OR51F1A6NGY5 319 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms