RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 CCDC153Q494R4 210 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 CPZQ66K79 652 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 SLC22A9Q8IVM8 553 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 OR2L5Q8NG80 312 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 OR52B6Q8NGF0 335 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 PCSK5Q92824 1860 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 ATP6V1E2Q96A05 226 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 REPS1Q96D71 796 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 VPS50Q96JG6 964 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 FER1L6-AS2Q96M78 137 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 NSUN5Q96P11 429 aaKnown RBP20.53■□□□□ 0.88
CLN3-207ENST00000395653 OR1F2PQ96R84 312 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 MS4A8Q9BY19 250 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 REXO4Q9GZR2 422 aaKnown RBP20.53■□□□□ 0.88
CLN3-207ENST00000395653 ACSS2Q9NR19 701 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 SMG1Q96Q15 3661 aaKnown RBP20.53■□□□□ 0.88
CLN3-207ENST00000395653 SOCS6O14544 535 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 ERI3O43414 337 aaKnown RBP20.53■□□□□ 0.88
CLN3-207ENST00000395653 B3GALT4O96024 378 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 PCNAP12004 261 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 EMP2P54851 167 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 TRAF3Q13114 568 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 TRIM40Q6P9F5 258 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 TRABD2AQ86V40 505 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 C4orf33Q8N1A6 199 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 OR5T3Q8NGG3 340 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 CCDC126Q96EE4 140 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 FAR2Q96K12 515 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 TRIM55Q9BYV6 548 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 SEMA4BQ9NPR2 832 aaPredicted RBP20.53■□□□□ 0.88
CLN3-207ENST00000395653 MKS1Q9NXB0 559 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 RNF11Q9Y3C5 154 aa20.53■□□□□ 0.88
CLN3-207ENST00000395653 ATRXP46100 2492 aa20.52■□□□□ 0.88
CLN3-207ENST00000395653 A0A088AWK7 358 aa20.52■□□□□ 0.87
CLN3-207ENST00000395653 PLIN3O60664 434 aa20.52■□□□□ 0.87
CLN3-207ENST00000395653 PROCP04070 461 aa20.52■□□□□ 0.87
CLN3-207ENST00000395653 HEXBP07686 556 aa20.52■□□□□ 0.87
CLN3-207ENST00000395653 ZNF10P21506 573 aaPredicted RBP20.52■□□□□ 0.87
CLN3-207ENST00000395653 PIK3CBP42338 1070 aa20.52■□□□□ 0.87
CLN3-207ENST00000395653 PRKAA2P54646 552 aa20.52■□□□□ 0.87
CLN3-207ENST00000395653 GGTA1PQ4G0N0 100 aa20.52■□□□□ 0.87
CLN3-207ENST00000395653 DCAF10Q5QP82 559 aa20.52■□□□□ 0.87
CLN3-207ENST00000395653 ZNF678Q5SXM1 525 aa20.52■□□□□ 0.87
CLN3-207ENST00000395653 ABHD17CQ6PCB6 329 aa20.52■□□□□ 0.87
CLN3-207ENST00000395653 KIRREL2Q6UWL6 708 aa20.52■□□□□ 0.87
CLN3-207ENST00000395653 SRFBP1Q8NEF9 429 aaKnown RBP20.52■□□□□ 0.87
CLN3-207ENST00000395653 MAGEB10Q96LZ2 347 aaPredicted RBP20.52■□□□□ 0.87
CLN3-207ENST00000395653 TMEM237Q96Q45 408 aa20.52■□□□□ 0.87
CLN3-207ENST00000395653 MKL2Q9ULH7 1088 aa20.52■□□□□ 0.87
CLN3-207ENST00000395653 CHST10O43529 356 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 JRKO75564 520 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 DNAJB5O75953 348 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 OTCP00480 354 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 IMPDH1P20839 514 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 ARL1P40616 181 aaPredicted RBP20.51■□□□□ 0.87
CLN3-207ENST00000395653 OLR1P78380 273 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 BTN3A2P78410 334 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 PHEXP78562 749 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 TGM3Q08188 693 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 CHAF1BQ13112 559 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 CPSF6Q16630 551 aaKnown RBP eCLIP20.51■□□□□ 0.87
CLN3-207ENST00000395653 TMEM35AQ53FP2 167 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 ZYG11AQ6WRX3 759 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 SHISA5Q8N114 240 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 HUS1BQ8NHY5 278 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 RDH11Q8TC12 318 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 PPP4R1Q8TF05 950 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 L3HYPDHQ96EM0 354 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 CMTM7Q96FZ5 175 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 PEX11GQ96HA9 241 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 CDK15Q96Q40 435 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 NPLQ9BXD5 320 aaPredicted RBP20.51■□□□□ 0.87
CLN3-207ENST00000395653 SCN3AQ9NY46 2000 aa20.51■□□□□ 0.87
CLN3-207ENST00000395653 A0A1W2PQ72 361 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 G3V2L1 256 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 MKRN2OSH3BPM6 223 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 ERLIN1O75477 346 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 SUPT7LO94864 414 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 MYL2P10916 166 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 ACPPP15309 386 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 PLA2G16P53816 162 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 CDH13P55290 713 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 CLCQ05315 142 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 ZRSR2Q15696 482 aaKnown RBP20.5■□□□□ 0.87
CLN3-207ENST00000395653 TUBB8Q3ZCM7 444 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 MINDY4Q4G0A6 757 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 UNC50Q53HI1 259 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 CHSY3Q70JA7 882 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 RPS27LQ71UM5 84 aaKnown RBP20.5■□□□□ 0.87
CLN3-207ENST00000395653 CLEC1AQ8NC01 280 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 OR11G2Q8NGC1 345 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 WDR20Q8TBZ3 569 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 TBC1D20Q96BZ9 403 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 ABHD17AQ96GS6 310 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 APOPT1Q96IL0 206 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 QRFPRQ96P65 431 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 F2RL3Q96RI0 385 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 SEMA4CQ9C0C4 833 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 VN1R1Q9GZP7 353 aa20.5■□□□□ 0.87
CLN3-207ENST00000395653 DMRT3Q9NQL9 472 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms