RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 OR4Q2P0C623 313 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 CXCR1P25024 350 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 GK2Q14410 553 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-202ENST00000394243 SLBPQ14493 270 aaKnown RBP eCLIP11.47□□□□□ -0.57
SYNPO-202ENST00000394243 EXOC3L2Q2M3D2 409 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 GPC2Q8N158 579 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 PLD6Q8N2A8 252 aaKnown RBP11.47□□□□□ -0.57
SYNPO-202ENST00000394243 NAXEQ8NCW5 288 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 PBDC1Q9BVG4 233 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 LOC730098B7Z3J9 87 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 H7C417 338 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 CDC7O00311 574 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 HSPA12AO43301 675 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 GINS1Q14691 196 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 SPHARQ15513 63 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 FAM189A2Q15884 450 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 MEDAGQ5VYS4 303 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 FAM217AQ8IXS0 508 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 LILRB4Q8NHJ6 448 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 SPPL2BQ8TCT7 592 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 IRGQQ8WZA9 623 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 FCRL5Q96RD9 977 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 MAGED1Q9Y5V3 778 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-202ENST00000394243 TTC24A2A3L6 582 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-202ENST00000394243 EIF1AYO14602 144 aaKnown RBP11.47□□□□□ -0.57
SYNPO-202ENST00000394243 LYPLA2O95372 231 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 RETP07949 1114 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 HERV-K104P61576 105 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 BTN1A1Q13410 526 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 PLEKHN1Q494U1 663 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-202ENST00000394243 UBXN11Q5T124 520 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 UGT2A3Q6UWM9 527 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 ZNF584Q8IVC4 421 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 ARL14Q8N4G2 192 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 VGLL2Q8N8G2 317 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 LIN37Q96GY3 246 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-202ENST00000394243 MFSD1Q9H3U5 465 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 HAS3O00219 553 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 BCKDHAP12694 445 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 IDSP22304 550 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 ATP4BP51164 291 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 TATDN1Q6P1N9 297 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 MBOAT1Q6ZNC8 495 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 FAM124AQ86V42 546 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 OR52E4Q8NGH9 312 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 CD300AQ9UGN4 299 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 SLC2A6Q9UGQ3 507 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 ARVCFO00192 962 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 AKR1A1P14550 325 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 DRD5P21918 477 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 ALDH3B1P43353 468 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 EIF1AXP47813 144 aaKnown RBP11.47□□□□□ -0.57
SYNPO-202ENST00000394243 MASP1P48740 699 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 EMX2Q04743 252 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 GNMTQ14749 295 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 IGDCC3Q8IVU1 814 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 GOLM1Q8NBJ4 401 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 CHDHQ8NE62 594 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-202ENST00000394243 OR2T35Q8NGX2 323 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 ZDHHC1Q8WTX9 485 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 C7orf43Q8WVR3 580 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 SEZ6LQ9BYH1 1024 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 PHPT1Q9NRX4 125 aaPredicted RBP11.47□□□□□ -0.57
SYNPO-202ENST00000394243 SLC22A14Q9Y267 594 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 PCDHGA8Q9Y5G5 932 aa11.47□□□□□ -0.57
SYNPO-202ENST00000394243 MYH7BA7E2Y1 1941 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 TBC1D3DA0A087WVF3 549 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 TBC1D3IA0A087WXS9 549 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 TBC1D3EA0A087X179 549 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 TBC1D3KA0A087X1G2 549 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 TBC1D3FA6NER0 549 aaPredicted RBP11.46□□□□□ -0.57
SYNPO-202ENST00000394243 TBC1D3LB9A6J9 549 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 ARPC5O15511 151 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 PI15O43692 258 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 B3GALT2O43825 422 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 JUNP05412 331 aaKnown RBP11.46□□□□□ -0.57
SYNPO-202ENST00000394243 TBC1D3HP0C7X1 549 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 OLIG2Q13516 323 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 TBC1D3GQ6DHY5 549 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 TBC1D3CQ6IPX1 549 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 TBC1D3Q8IZP1 549 aaPredicted RBP11.46□□□□□ -0.57
SYNPO-202ENST00000394243 LAMP5Q9UJQ1 280 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 MYH7P12883 1935 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 GOSR2O14653 212 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 MUSKO15146 869 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 HLA-DQB2P05538 268 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 SEMG2Q02383 582 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 TBC1D25Q3MII6 688 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 C10orf62Q5T681 223 aaPredicted RBP11.46□□□□□ -0.57
SYNPO-202ENST00000394243 NCBP2-AS2Q69YL0 99 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 TLDC1Q6P9B6 456 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 PIWIL3Q7Z3Z3 882 aaKnown RBP11.46□□□□□ -0.57
SYNPO-202ENST00000394243 OR6Q1Q8NGQ2 317 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 GNPDA2Q8TDQ7 276 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 FAM163AQ96GL9 167 aaPredicted RBP11.46□□□□□ -0.57
SYNPO-202ENST00000394243 PRR11Q96HE9 360 aaPredicted RBP11.46□□□□□ -0.57
SYNPO-202ENST00000394243 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.46□□□□□ -0.57
SYNPO-202ENST00000394243 EEF1E1-BLOC1S5C9J1V9 151 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 GRID2O43424 1007 aa11.46□□□□□ -0.57
SYNPO-202ENST00000394243 CAMLGP49069 296 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms