RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 MOB3CQ70IA8 216 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 PIWIL3Q7Z3Z3 882 aaKnown RBP-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 CCDC117Q8IWD4 279 aaPredicted RBP-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 ZNF101Q8IZC7 436 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 SLC5A8Q8N695 610 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 C1orf52Q8N6N3 182 aaKnown RBP-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 TMEM99Q8N816 258 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 ZDHHC22Q8N966 263 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 OR52P1PQ8NH57 321 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 SLC2A12Q8TD20 617 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 APOBEC4Q8WW27 367 aaKnown RBP-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 CLDN23Q96B33 292 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 FAM149B1Q96BN6 582 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 HSPBAP1Q96EW2 488 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 FAM218AQ96MZ4 157 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 YPEL2Q96QA6 119 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 CDRT15Q96T59 188 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 MCHR1Q99705 422 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 MYD88Q99836 296 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 C19orf43Q9BQ61 176 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 FAIM2Q9BWQ8 316 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 DDX24Q9GZR7 859 aaKnown RBP eCLIP-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 ZBP1Q9H171 429 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 DHX35Q9H5Z1 703 aaKnown RBP-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 METTL17Q9H7H0 456 aaPredicted RBP-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 POLR1BQ9H9Y6 1135 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 BPIFA1Q9NP55 256 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 A4GALTQ9NPC4 353 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 KLHL21Q9UJP4 597 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 RCE1Q9Y256 329 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 SLCO1B1Q9Y6L6 691 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 KNTC1P50748 2209 aa-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 MN1Q10571 1320 aaPredicted RBP-1.16□□□□□ -2.6
RNU6-540P-201ENST00000384622 SMARCA2P51531 1590 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 ZNF106Q9H2Y7 1883 aaKnown RBP-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 TRGV8A0A0C4DH27 118 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 TEX13CA0A0J9YWL9 993 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 IQANK1A0A1B0GTG1 560 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 A0A1W2PRB8 838 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 CCT8L1PA6NM43 557 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 G3V4G9 280 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 SMAD9O15198 467 aaKnown RBP-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 GLRA3O75311 464 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 CDK2AP2O75956 126 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 ACTL6BO94805 426 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 SNUPNO95149 360 aaKnown RBP-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 GCNT3O95395 438 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 GLP2RO95838 553 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 TRUB2O95900 331 aaKnown RBP-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 ADORA3P0DMS8 318 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 PRKAR1AP10644 381 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 TDGF1P13385 188 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 CHN1P15882 459 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 PAICSP22234 425 aaKnown RBP-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 PAX7P23759 505 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 HRH2P25021 359 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 GABRB3P28472 473 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 CDK7P50613 346 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 CXCL6P80162 114 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 PAX2Q02962 417 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 TNK1Q13470 666 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 DEFB115Q30KQ5 88 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 RFX4Q33E94 735 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 RAB6CQ53S08 254 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 CCDC181Q5TID7 509 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 LCN1P1Q5VSP4 162 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 C22orf42Q6IC83 251 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 DENND1BQ6P3S1 775 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 C10orf99Q6UWK7 81 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 KIAA1328Q86T90 577 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 TDHQ8IZJ6 230 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 ZNRF2Q8NHG8 242 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 HUS1BQ8NHY5 278 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 ZNF502Q8TBZ5 544 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 BRSK1Q8TDC3 778 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 KCNE4Q8WWG9 221 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 MT1LQ93083 61 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 RPUSD4Q96CM3 377 aaKnown RBP-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 CATSPER2Q96P56 530 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 PRAM1Q96QH2 718 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 CCT8L2Q96SF2 557 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 STRBPQ96SI9 672 aaKnown RBP-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 NPAS2Q99743 824 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 B3GNT5Q9BYG0 378 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 LRRC27Q9C0I9 530 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 NYXQ9GZU5 481 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 RAB6CQ9H0N0 254 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 FAM49AQ9H0Q0 323 aaPredicted RBP-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 CPVLQ9H3G5 476 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 ANKRA2Q9H9E1 313 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 FBXO8Q9NRD0 319 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 UBQLN4Q9NRR5 601 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 NLGN3Q9NZ94 848 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 HAO1Q9UJM8 370 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 BAG5Q9UL15 447 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 MRPL11Q9Y3B7 192 aaKnown RBP-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 CDC42BPGQ6DT37 1551 aa-1.17□□□□□ -2.6
RNU6-540P-201ENST00000384622 VPS13CQ709C8 3753 aa-1.18□□□□□ -2.6
RNU6-540P-201ENST00000384622 A0A0A6YYC8 382 aaPredicted RBP-1.18□□□□□ -2.6
RNU6-540P-201ENST00000384622 RNF212BA8MTL3 300 aa-1.18□□□□□ -2.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms