RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 CAMK2GQ13555 558 aaPredicted RBP20.64■□□□□ 0.89
TRIM54-202ENST00000380075 ELOAQ14241 798 aaKnown RBP20.64■□□□□ 0.89
TRIM54-202ENST00000380075 C6orf141Q5SZD1 244 aa20.64■□□□□ 0.89
TRIM54-202ENST00000380075 ZNF691Q5VV52 312 aa20.64■□□□□ 0.89
TRIM54-202ENST00000380075 FAM83HQ6ZRV2 1179 aaPredicted RBP20.64■□□□□ 0.89
TRIM54-202ENST00000380075 HORMAD1Q86X24 394 aa20.64■□□□□ 0.89
TRIM54-202ENST00000380075 SETD9Q8NE22 299 aa20.64■□□□□ 0.89
TRIM54-202ENST00000380075 DTNBP1Q96EV8 351 aa20.64■□□□□ 0.89
TRIM54-202ENST00000380075 HSH2DQ96JZ2 352 aa20.64■□□□□ 0.89
TRIM54-202ENST00000380075 SH3BGRLO75368 114 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 EGFP01133 1207 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 EEF1B2P24534 225 aaKnown RBP20.63■□□□□ 0.89
TRIM54-202ENST00000380075 PIGAP37287 484 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 ITGA1P56199 1179 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 NUP107P57740 925 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 CDK3Q00526 305 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 RBBP4Q09028 425 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 GRSF1Q12849 480 aaKnown RBP eCLIP20.63■□□□□ 0.89
TRIM54-202ENST00000380075 PMS2P3Q13401 168 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 GAB1Q13480 694 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 RAB39AQ14964 217 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 UBXN2BQ14CS0 331 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 AGERQ15109 404 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 FAM71E1Q6IPT2 247 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 TMIGD1Q6UXZ0 262 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 NUDT18Q6ZVK8 323 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 HEATR4Q86WZ0 1026 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 ZNF687Q8N1G0 1237 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 CHDHQ8NE62 594 aaPredicted RBP20.63■□□□□ 0.89
TRIM54-202ENST00000380075 C16orf78Q8WTQ4 265 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 TFGQ92734 400 aaPredicted RBP20.63■□□□□ 0.89
TRIM54-202ENST00000380075 PPCDCQ96CD2 204 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 MAGED4Q96JG8 741 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 DPH2Q9BQC3 489 aaPredicted RBP20.63■□□□□ 0.89
TRIM54-202ENST00000380075 PCBD2Q9H0N5 130 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 RAD21L1Q9H4I0 556 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 PELI2Q9HAT8 420 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 AHSPQ9NZD4 102 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 FAF1Q9UNN5 650 aaPredicted RBP20.63■□□□□ 0.89
TRIM54-202ENST00000380075 ABCG2Q9UNQ0 655 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 WBP11Q9Y2W2 641 aaKnown RBP20.63■□□□□ 0.89
TRIM54-202ENST00000380075 HSPE1-MOB4S4R3N1 261 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 GPR37L1O60883 481 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 FKBP9O95302 570 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 TGFB1P01137 390 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 APODP05090 189 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 TEAD1P28347 426 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 SERPINB1P30740 379 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 FADDQ13158 208 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 TUBA3CQ13748 450 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 FAM129CQ86XR2 697 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 PLA2G15Q8NCC3 412 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 PIK3C3Q8NEB9 887 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 FLCNQ8NFG4 579 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 LTB4R2Q9NPC1 389 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 SPATA7Q9P0W8 599 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 TMEM98Q9Y2Y6 226 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 U3KQV3 271 aa20.63■□□□□ 0.89
TRIM54-202ENST00000380075 TMEM221A6NGB7 291 aa20.62■□□□□ 0.89
TRIM54-202ENST00000380075 FAM170BA6NMN3 283 aa20.62■□□□□ 0.89
TRIM54-202ENST00000380075 K7EQS6 105 aa20.62■□□□□ 0.89
TRIM54-202ENST00000380075 M0R296 226 aa20.62■□□□□ 0.89
TRIM54-202ENST00000380075 PRKACGP22612 351 aa20.62■□□□□ 0.89
TRIM54-202ENST00000380075 CXCR2P25025 360 aa20.62■□□□□ 0.89
TRIM54-202ENST00000380075 YAP1P46937 504 aaKnown RBP20.62■□□□□ 0.89
TRIM54-202ENST00000380075 ZNF385BQ569K4 471 aa20.62■□□□□ 0.89
TRIM54-202ENST00000380075 OR52N2Q8NGI0 321 aa20.62■□□□□ 0.89
TRIM54-202ENST00000380075 OR5K2Q8NHB8 316 aa20.62■□□□□ 0.89
TRIM54-202ENST00000380075 PITHD1Q9GZP4 211 aaPredicted RBP20.62■□□□□ 0.89
TRIM54-202ENST00000380075 ADNPQ9H2P0 1102 aa20.62■□□□□ 0.89
TRIM54-202ENST00000380075 OR51B5Q9H339 312 aa20.62■□□□□ 0.89
TRIM54-202ENST00000380075 VNN3Q9NY84 501 aa20.62■□□□□ 0.89
TRIM54-202ENST00000380075 MRPS17Q9Y2R5 130 aaKnown RBP20.62■□□□□ 0.89
TRIM54-202ENST00000380075 TECTAO75443 2155 aa20.62■□□□□ 0.89
TRIM54-202ENST00000380075 BCKDKO14874 412 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 SUV39H1O43463 412 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 SEMA3DO95025 777 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 C1QCP02747 245 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 DRD1P21728 446 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 GSTM2P28161 218 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 C2orf80Q0P641 193 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 CCINQ13939 588 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 KEAP1Q14145 624 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 METRNLQ641Q3 311 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 KDM4DQ6B0I6 523 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 C17orf64Q86WR6 236 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 OR5AR1Q8NGP9 310 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 OR10Q1Q8NGQ4 319 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 FBLIM1Q8WUP2 373 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 ZNF566Q969W8 418 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 REEP1Q9H902 201 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 KMOO15229 486 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 PCCBP05166 539 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 CCDC159P0C7I6 412 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 ISL1P61371 349 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 VLDLRP98155 873 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 CD47Q08722 323 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 FZD5Q13467 585 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 NATD1Q8N6N6 113 aa20.61■□□□□ 0.89
TRIM54-202ENST00000380075 C12orf43Q96C57 262 aaKnown RBP20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms